FastQCFastQC Report
Thu 23 Jun 2016
P1234_1004_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameP1234_1004_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31194060
Sequences flagged as poor quality0
Sequence length123
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGGAT1509760.4839895800674872No Hit
TCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCTCCGCCAGGGCCGTGG1184850.37983192954043177No Hit
GTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGGA894660.2868046031840677No Hit
CTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAG793090.2542439169508554No Hit
CTGTATTGTTATTTTTCGTCACTACCTCCCCGGGTCGGGAGTGGGTAATT754100.24174474242852645No Hit
CTTAGGACACCTGCGTTACCGTTTGACAGGTGTACCGCCCCAGTCAAACT749800.24036627486130374No Hit
TGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGG744210.23857426702391415No Hit
CCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCC731880.2346215914183662No Hit
GTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGGATCG702890.22532815542446222No Hit
TACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGAGATCGGG643440.20627003987297582No Hit
CTGCAATTCACATTAATTCTCGCAGCTAGCTGCGTTCTTCATCGACGCAC606990.19458512293686683No Hit
GCTTAAAACCCAAAAGGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTC578950.18559623210316323No Hit
GGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGGATC504970.16188017846987535No Hit
ACTTCCTCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCTCCGCCAGGG483140.15488205126232366No Hit
ATCCAAGTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGA478440.15337535415396392No Hit
TTGAATATTTGCTACTACCACCAAGATCTGCACCTGCGGCGGCTCCACCC444970.14264574729932558No Hit
GTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGAGATCGG434200.13919316690421188No Hit
TCCTGCAATTCACATTAATTCTCGCAGCTAGCTGCGTTCTTCATCGACGC433850.13908096605571701No Hit
TTGCGCCACGGCGGCTTTCGTGCGAGCCCCCGACTCGCGCACGTGTTAGA431850.13843981835003202No Hit
GTTCTTGATTAATGAAAACATTCTTGGCAAATGCTTTCGCTCTGGTCCGT407690.1306947540653573No Hit
TGCTTAAAACCCAAAAGGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGT401310.1286494928842222No Hit
CCGTGTCCGGGCCGGGTGAGGTTTCCCGTGTTGGGTCAAATTAAGCCGCA391790.12559762980516162No Hit
CCTTTAAGTTTCAGCTTTGCAACCATACTCCCCCCGGAACCCAAAGACTT390970.1253347592458308No Hit
ATTCACATTAATTCTCGCAGCTAGCTGCGTTCTTCATCGACGCACGAGCC390160.12507509442502834No Hit
GTTTATCGATTACAGAACAGGCTCCTCTAGAGGGATATGAAGCACCGCCA365520.11717615469098924No Hit
GCAATTCACATTAATTCTCGCAGCTAGCTGCGTTCTTCATCGACGCACGA357200.11450898023533967No Hit
CCTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAA334950.10737621200959413No Hit
TTGTTATTTTTCGTCACTACCTCCCCGGGTCGGGAGTGGGTAATTTGCGC314230.10073392177869761No Hit
CCTTGTGTCGAGGGCTGACTTTCAATAGATCGCAGCGAGGGAGCTGCTCT313560.10051913729729313No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCGCAA20800.053.198221
TTATCGA84850.052.9676483
TATCGAT89250.050.814774
ATCGATT97250.046.8140225
GTTATCG89200.044.808173
GTATTGT234150.043.9365583
CGACCTG349700.042.528728
CCGACCT351350.042.3451737
TGTATTG239750.042.215462
CGGAATT96700.041.9889878
CGATTAC108600.041.5896227
TTTCCGA360700.041.3704764
TCGCAAG26850.041.205262
TAGGTAC92550.040.7110068
CGTTATC85450.040.623542
GTTTCCG358350.038.8007743
CGGACTA30700.038.5166172
TCCGACC395200.038.314916
TCGTTAT86250.037.8768351
GTCGTTT49700.037.6957361