FastQCFastQC Report
Thu 23 Jun 2016
P1234_1013_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameP1234_1013_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences59012592
Sequences flagged as poor quality0
Sequence length123
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCCAAGTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGA1682660.28513575543334885No Hit
TACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGAGATCGGG1666540.2824041350361292No Hit
TGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGGAT1156000.1958903957311348No Hit
CATCCAAGTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACG895060.1516727141895411No Hit
GTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGAGATCGG771400.1307178644178178No Hit
GTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGGA702930.11911525594401953No Hit
ACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGAGATCGGGC684900.1160599758099085No Hit
TCCTGCAATTCACATTAATTCTCGCAGCTAGCTGCGTTCTTCATCGACGC622270.10544698663634364No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGTACG34950.044.55641
CGATTAC105950.041.413227
TATCGAT112250.039.8274234
TTATCGA110450.039.5760353
CAAGTAC1041100.038.7652854
CGACCTG253800.038.103498
ACCGTCC253850.037.4502647
GTTATCG69300.037.4065743
GTCGCAA36300.037.093421
AGTACTA1102400.036.4973536
TCCGACC279900.035.65976
ATCGATT126600.035.450575
CCGACCT274200.035.4389537
TTCCGAC281550.034.8321345
TTTCCGA283150.034.38844
CCGTCCT281100.034.0907488
CACCGTC281150.034.0861056
GTACTAA1179900.034.058627
TTATCGG76700.033.9500054
CCCGGTA94250.033.8294839