FastQCFastQC Report
Thu 23 Jun 2016
P1234_1014_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameP1234_1014_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46909968
Sequences flagged as poor quality0
Sequence length123
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCGGAA7397391.5769334995069704No Hit
CGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGC1722000.3670861595983182No Hit
GACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGCT614160.13092313343722595No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCTACG907300.0110.9037251
TCTACGG934800.0107.272452
TACGGCC942600.0105.684474
CTACGGC949800.0105.547573
CGGCCAT965500.0103.049556
ACGGCCA985100.0100.993635
GCCATAC1023450.096.6521458
GGCCATA1081350.092.116937
CCATACC1087850.090.908929
CACGACG117950.055.370911
TTAGCGG420850.054.408117
CTTAGCG434150.052.9299936
GAACGCG971100.051.54474620-21
CGACTCT454000.051.481421
AGCGGTG442800.051.2743159
TAGCGGT445750.051.2494668
AACGCGC967000.050.23809422-23
ACGCGCC1032850.048.26798622-23
TCGGACG95350.047.37678106-107
CGCGTAT34800.047.259373110-111