FastQCFastQC Report
Thu 23 Jun 2016
P1234_1001_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameP1234_1001_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33741075
Sequences flagged as poor quality0
Sequence length123
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCGGAA4987321.4781153238300795No Hit
GGTTTAGTGAGGCCCTCGGATCGGCCCCGCCGGGGTCGGCCCACGGCCCT953330.2825428650391252No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTC892000.26436620647089637No Hit
CGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGC888430.2633081488956709No Hit
GTAGCCCCGGGAGGAACCCGGGGCCGCAAGTGCGTTCGAAGTGTCGATGA551560.16346841349897712No Hit
GCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG517900.1534924420754229No Hit
GCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCA464730.13773420082199517No Hit
GGATGGTTTAGTGAGGCCCTCGGATCGGCCCCGCCGGGGTCGGCCCACGG416910.1235615640580509No Hit
GGAGCAGAAGGGCAAAAGCTCGCTTGATCTTGATTTTCAGTACGAATACA389770.11551795548897005No Hit
GGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAG348940.10341697767483697No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCTACG579000.0108.4189151
TCTACGG606900.0103.357742
TACGGCC608900.0102.778414
CTACGGC644150.097.489583
CGGCCAT656200.095.337616
ACGGCCA666000.094.001435
GCCATAC672250.092.5536048
GGCCATA678800.092.343477
CCATACC693350.089.534839
CGACTCT194550.059.1823431
TTAGCGG207100.054.5768787
GCGCGGT125050.051.5699126
CTTAGCG227200.049.928896
AACGCGC659250.046.94569422-23
GAACGCG685150.046.4754220-21
ACGCGCC701200.045.0326122-23
GTAGCCC155250.045.0024721
CATACCA706650.044.33003210-11
TAGCCCC156450.044.28392
CACGACG95800.043.842991