FastQCFastQC Report
Thu 23 Jun 2016
P1234_1001_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameP1234_1001_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33741075
Sequences flagged as poor quality0
Sequence length123
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCTCCGCCAGGGCCGTGG2022060.5992873671037452No Hit
TGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGGAT893270.26474260230297936No Hit
TACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGAGATCGGG805230.23864977627417028No Hit
ACTTCCTCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCTCCGCCAGGG748910.22195795480730832No Hit
ATCCAAGTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGA595990.1766363401284636No Hit
GTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGAGATCGG530610.15725936414296224No Hit
CCTTTAAGTTTCAGCTTTGCAACCATACTCCCCCCGGAACCCAAAGACTT529660.15697780820557733No Hit
GTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGGA501020.14848963763009923No Hit
CTTAGGACACCTGCGTTACCGTTTGACAGGTGTACCGCCCCAGTCAAACT478470.14180638880059393No Hit
CTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAG465930.13808985042711294No Hit
GTTCTTGATTAATGAAAACATTCTTGGCAAATGCTTTCGCTCTGGTCCGT444180.13164370133435288No Hit
TGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGG437550.12967873726607704No Hit
TACGACTTTTACTTCCTCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGC437190.12957204238454167No Hit
GTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGGATCG415300.12308440083785119No Hit
GGTTTGTTAGGTACTGTTTGCATTAATAAATTAAAGCTCCATAGGGTCTT390870.1158439676269947No Hit
ACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGAGATCGGGC369790.10959638956375871No Hit
GCTTAAAACCCAAAAGGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTC360410.10681639515042127No Hit
CTTTAAGTTTCAGCTTTGCAACCATACTCCCCCCGGAACCCAAAGACTTT356190.10556569403909034No Hit
TTTAAGTTTCAGCTTTGCAACCATACTCCCCCCGGAACCCAAAGACTTTG339190.10052732463325487No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGATTAC82200.046.262187
GTTATCG89150.046.145563
CGGACTA20900.045.3721852
TTATCGA86300.044.2112463
CCGTTAA63450.043.090131
TTATCGG98550.042.2187234
TATCGAT92800.041.3033684
CGTTATC92100.040.3585052
TATCGGA106250.038.9928935
TAGGTAC133400.038.1998
TTTATCG98550.038.1922572
TCGTTAT92400.037.3828621
CGGAATT111100.037.3354878
GATAGTC750300.036.8274965
TAGATAG757850.035.9136123
CTAGATA705100.035.8304022
AGATAGT773500.035.8221634
TAGTCAA802800.034.484347
ATCGATT111150.034.4309845
TCGGAAT122850.033.9077