Basic Statistics
Measure | Value |
---|---|
Filename | P1234_1016_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 28242306 |
Sequences flagged as poor quality | 0 |
Sequence length | 123 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCGGAA | 237774 | 0.8419071728774554 | No Hit |
CGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGC | 51019 | 0.1806474301354854 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTCTACG | 35840 | 0.0 | 110.24946 | 1 |
TCTACGG | 37200 | 0.0 | 105.889046 | 2 |
TACGGCC | 37750 | 0.0 | 103.43329 | 4 |
CTACGGC | 38235 | 0.0 | 102.96158 | 3 |
CGGCCAT | 38710 | 0.0 | 100.39412 | 6 |
ACGGCCA | 40705 | 0.0 | 95.62244 | 5 |
GCCATAC | 41480 | 0.0 | 93.08072 | 8 |
GGCCATA | 45485 | 0.0 | 85.85059 | 7 |
CCATACC | 45375 | 0.0 | 84.71733 | 9 |
CACGACG | 10570 | 0.0 | 54.824856 | 1 |
TATCGCG | 4790 | 0.0 | 51.710396 | 106-107 |
CGCGTAT | 4910 | 0.0 | 51.484806 | 110-111 |
CGCGAAT | 6250 | 0.0 | 51.276913 | 110-111 |
TCGCGTA | 4915 | 0.0 | 50.700016 | 108-109 |
GTCGTAT | 10380 | 0.0 | 50.323086 | 110-111 |
AGTCGCG | 6380 | 0.0 | 50.13701 | 106-107 |
ATCGCGT | 5055 | 0.0 | 49.29586 | 108-109 |
ACGCCGT | 6075 | 0.0 | 48.612595 | 110-111 |
CGTATCG | 5020 | 0.0 | 48.583176 | 104-105 |
ATCCCGT | 12025 | 0.0 | 47.722004 | 108-109 |