FastQCFastQC Report
Thu 23 Jun 2016
P1234_1006_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameP1234_1006_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30839171
Sequences flagged as poor quality0
Sequence length123
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGGAT1261650.409106327793312No Hit
TCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCTCCGCCAGGGCCGTGG1202420.38990023434806337No Hit
CCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCC801520.25990322502508256No Hit
CTGTATTGTTATTTTTCGTCACTACCTCCCCGGGTCGGGAGTGGGTAATT788830.25578832842166865No Hit
TACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGAGATCGGG757480.24562268551252558No Hit
GTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGGA739900.23992214317304444No Hit
CTGCAATTCACATTAATTCTCGCAGCTAGCTGCGTTCTTCATCGACGCAC686050.22246058430040158No Hit
CTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAG663390.215112786267828No Hit
CTTAGGACACCTGCGTTACCGTTTGACAGGTGTACCGCCCCAGTCAAACT659460.21383843294620336No Hit
TGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGG627370.2034328354675941No Hit
GTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGGATCG596820.19352660290381996No Hit
ATCCAAGTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGA586500.19018020944856137No Hit
GCTTAAAACCCAAAAGGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTC508740.16496552387870608No Hit
TCCTGCAATTCACATTAATTCTCGCAGCTAGCTGCGTTCTTCATCGACGC502860.1630588578402448No Hit
GTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGAGATCGG492210.15960545761752157No Hit
TTGAATATTTGCTACTACCACCAAGATCTGCACCTGCGGCGGCTCCACCC484390.15706972149154072No Hit
ACTTCCTCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCTCCGCCAGGG478440.1551403570478597No Hit
TTGCGCCACGGCGGCTTTCGTGCGAGCCCCCGACTCGCGCACGTGTTAGA472290.15314614001783639No Hit
CCGTGTCCGGGCCGGGTGAGGTTTCCCGTGTTGGGTCAAATTAAGCCGCA464820.1507238959179545No Hit
ATTCACATTAATTCTCGCAGCTAGCTGCGTTCTTCATCGACGCACGAGCC444910.14426782094758644No Hit
GGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGGATC422590.13703027231179463No Hit
CCTTTAAGTTTCAGCTTTGCAACCATACTCCCCCCGGAACCCAAAGACTT412900.13388816450351407No Hit
GCAATTCACATTAATTCTCGCAGCTAGCTGCGTTCTTCATCGACGCACGA408540.13247437812125365No Hit
GTTCTTGATTAATGAAAACATTCTTGGCAAATGCTTTCGCTCTGGTCCGT398850.12933227031297306No Hit
CGTGTCCGGGCCGGGTGAGGTTTCCCGTGTTGGGTCAAATTAAGCCGCAG364200.11809655972918338No Hit
ACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGAGATCGGGC341930.11087522423997714No Hit
GTTTATCGATTACAGAACAGGCTCCTCTAGAGGGATATGAAGCACCGCCA325490.10554434164264662No Hit
TGCTTAAAACCCAAAAGGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGT324210.10512928509005641No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCGCAA21900.056.136961
TTATCGA81850.049.759183
TATCGAT83650.049.3875124
ATCGATT88500.046.415355
GTTATCG100000.045.292223
GTATTGT239950.045.2138633
TCGCAAG25900.045.2008742
TGTACGA17850.044.5981942
CCGACCT367850.043.7214937
TGTATTG244700.043.5365452
CGACCTG371150.043.4908078
TTTCCGA377850.042.758794
TAGGTAC90900.042.3503728
GTCGTTT48950.041.978621
CGGAATT108200.041.6350148
CGTTATC94700.041.3516432
CGATTAC102700.040.161487
TCCGACC407900.040.0481386
GTTTCCG376800.039.8034173
TGTCCGT317500.038.4775476