FastQCFastQC Report
Thu 23 Jun 2016
P1234_1010_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameP1234_1010_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11357451
Sequences flagged as poor quality0
Sequence length123
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCCAAGTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGA789450.6950943481948546No Hit
TACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGAGATCGGG710120.6252459288620308No Hit
GTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGAGATCGG351050.3090922426167632No Hit
ACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGAGATCGGGC301120.265129913393419No Hit
CATCCAAGTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACG299580.2637739753400653No Hit
TCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCTCCGCCAGGGCCGTGG245360.21603439011095008No Hit
CCATCCAAGTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGAC228830.20148006801878343No Hit
GTCCAAGTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGA212470.18707542740003896No Hit
TGCTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGAGATCGGG169700.14941732964553403No Hit
CCAAGTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGAGA159480.14041883165509583No Hit
TCCTGCAATTCACATTAATTCTCGCAGCTAGCTGCGTTCTTCATCGACGC157420.13860504438892143No Hit
AGTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGAGATCG148450.13070714546776385No Hit
CTGCAATTCACATTAATTCTCGCAGCTAGCTGCGTTCTTCATCGACGCAC136610.12028227108353802No Hit
CAGAGCGGTCAAGTTAAGTTGAAATCTCCTAAGTGTAAGTTGGGTGCTTT132430.11660186779586369No Hit
CCTTGTGTCGAGGGCTGACTTTCAATAGATCGCAGCGAGGGAGCTGCTCT129930.11440066965730251No Hit
CCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCC129680.11418054984344639No Hit
CTACAGCACCCGGTATTCCCAGGCGGTCTCCCATCCAAGTACTAACCAGG127020.11183847502401728No Hit
TTCCAAGTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGA121100.10662603783190434No Hit
GCCGCAAGTGCGTTCGAAGTGTCGATGATCAATGTGTCCTGCAATTCACA118400.10424874384225827No Hit
GCTAAACCATTCGTAGACAAACCCTTGTGTCGAGGGCTGACTTTCAATAG116050.10217961759201075No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTCGACG29000.061.1698341
CAACGTG50100.053.962034
CCCAACG43850.053.6629372
CCAACGT48650.053.6465453
TCGACGA34300.052.5623252
CGAGGAT44050.052.1968736
GTTATCG16750.049.958683
CCCGGTA49450.049.3348929
GTCCAAG68900.048.178861
CGCCCAA16100.047.9999431
TCGTCCG17750.047.473164
TCCGATG35400.047.291252
AACGTGG57100.047.2425655
ACCGTCC78000.047.1783147
ACGTGGG57750.046.9058346
TCAACGA18050.046.374242
CACCGTC80950.046.327526
CCACCGT82300.046.0016175
GCCCAAC52850.045.418371
TCGTTAT17550.045.0349121