Basic Statistics
Measure | Value |
---|---|
Filename | P1234_1004_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 31194060 |
Sequences flagged as poor quality | 0 |
Sequence length | 123 |
%GC | 52 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCGGAA | 406306 | 1.302510798530233 | No Hit |
CGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGC | 222886 | 0.7145142376465263 | No Hit |
GCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG | 104519 | 0.3350605852524487 | No Hit |
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTC | 97983 | 0.31410787823066316 | No Hit |
GACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGCT | 69524 | 0.22287576545021712 | No Hit |
GGAGCAGAAGGGCAAAAGCTCGCTTGATCTTGATTTTCAGTACGAATACA | 66630 | 0.21359835814895528 | No Hit |
CGGGGGGCCGGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCTTCCCG | 60799 | 0.19490569678970932 | No Hit |
CGGCGGGGGACCGTCCCCCGACCGGCGACCGGCCGCCGCCGGGCGCATTT | 56341 | 0.18061451442999082 | No Hit |
CAGGGAGGACAGAAACCTCCCGTGGAGCAGAAGGGCAAAAGCTCGCTTGA | 54896 | 0.17598222225641677 | No Hit |
GGTTTAGTGAGGCCCTCGGATCGGCCCCGCCGGGGTCGGCCCACGGCCCT | 53935 | 0.17290150753060038 | No Hit |
GCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCA | 52395 | 0.16796467019682593 | No Hit |
CGGCCGGGCGCGACCCGCTCCGGGGACAGTGCCAGGTGGGGAGTTTGACT | 48712 | 0.1561579351966368 | No Hit |
CCCGCGGACGCTACGCCGCGACGAGTAGGAGGGCCGCTGCGGTGAGCCTT | 46801 | 0.1500317688688167 | No Hit |
GGGCAAAAGCTCGCTTGATCTTGATTTTCAGTACGAATACAGACCGTGAA | 45085 | 0.14453072155403945 | No Hit |
GGGGGGCCGGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCTTCCCGT | 43663 | 0.13997216136661914 | No Hit |
GTAGCCCCGGGAGGAACCCGGGGCCGCAAGTGCGTTCGAAGTGTCGATGA | 42853 | 0.13737551315859492 | No Hit |
GAGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGCGCGCCGGCCGGGC | 41110 | 0.13178791090355024 | No Hit |
GGGACCGGGGTCCGGTGCGGAGTGCCCTTCGTCCTGGGAAACGGGGCGCG | 37894 | 0.12147825579613555 | No Hit |
GGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGCGCGCCGGCCGGGCGC | 32922 | 0.10553932383280662 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTCTACG | 46420 | 0.0 | 109.35898 | 1 |
TCTACGG | 48740 | 0.0 | 104.17751 | 2 |
TACGGCC | 50490 | 0.0 | 100.20803 | 4 |
CTACGGC | 51085 | 0.0 | 99.39537 | 3 |
CGGCCAT | 51420 | 0.0 | 98.10484 | 6 |
ACGGCCA | 53510 | 0.0 | 94.3766 | 5 |
GCCATAC | 54260 | 0.0 | 92.11627 | 8 |
GGCCATA | 55880 | 0.0 | 90.325966 | 7 |
CCATACC | 58220 | 0.0 | 85.55976 | 9 |
GCGCGGT | 19095 | 0.0 | 72.530685 | 6 |
CTTAGCG | 45600 | 0.0 | 62.03825 | 6 |
TTAGCGG | 47225 | 0.0 | 59.766796 | 7 |
CGCGGTG | 23605 | 0.0 | 58.8207 | 7 |
GACTCTT | 53770 | 0.0 | 53.213104 | 2 |
AGCGGTG | 52965 | 0.0 | 53.21118 | 9 |
ACTCTTA | 53930 | 0.0 | 52.95774 | 3 |
CTCTTAG | 58100 | 0.0 | 49.156815 | 4 |
TCTTAGC | 58500 | 0.0 | 48.600388 | 5 |
GCGACCT | 27050 | 0.0 | 47.575905 | 2 |
CGACTCT | 61990 | 0.0 | 47.18411 | 1 |