FastQCFastQC Report
Thu 23 Jun 2016
P1234_1016_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameP1234_1016_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28242306
Sequences flagged as poor quality0
Sequence length123
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCTCCGCCAGGGCCGTGG499670.17692252183656676No Hit
TACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGAGATCGGG458700.16241591603745106No Hit
ATCCAAGTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGA440800.15607790666951912No Hit
TGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGGAT376390.13327169530703337No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCGCAA23750.051.516171
GTTATCG51450.051.1812553
ACCGTCC253000.047.7506687
GTCGGTA21550.047.5391771
TTATCGG56950.046.8544734
CACCGTC263450.046.304176
CGGAATT57200.045.3094868
CGATTAC52150.044.7608647
GCGTACG29500.044.6499941
CCGTCCT270850.044.560688
CGTTATC55650.044.4912
CGTCCTG276700.043.364179
TCGGAAT61550.042.7724727
TTATCGA55300.042.4329343
CCACCGT305900.039.7692385
TCGTTAT58700.039.692261
CCCGGTA53300.039.4041339
TCGGTAT27150.039.021662
TATCGAT62350.038.197764
GATAGTC273000.037.4243165