Basic Statistics
Measure | Value |
---|---|
Filename | P1234_1020_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 15843059 |
Sequences flagged as poor quality | 0 |
Sequence length | 123 |
%GC | 51 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCGGAA | 299697 | 1.891661200024566 | No Hit |
CGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGC | 118104 | 0.7454620979445952 | No Hit |
GACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGCT | 43314 | 0.27339417217344203 | No Hit |
AGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGA | 19985 | 0.1261435686126019 | No Hit |
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTC | 17953 | 0.11331776268711743 | No Hit |
GAGCACACGTCTGAACTCCAGTCACTCCGCGAAATCTCGTATGCCGTCTT | 16091 | 0.10156498186366661 | TruSeq Adapter, Index 6 (96% over 28bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTCTACG | 43750 | 0.0 | 112.10869 | 1 |
TCTACGG | 44905 | 0.0 | 108.75682 | 2 |
CTACGGC | 45960 | 0.0 | 105.993416 | 3 |
TACGGCC | 45580 | 0.0 | 105.76204 | 4 |
CGGCCAT | 46115 | 0.0 | 104.1978 | 6 |
GCCATAC | 46855 | 0.0 | 101.73828 | 8 |
ACGGCCA | 47555 | 0.0 | 101.13498 | 5 |
GGCCATA | 49245 | 0.0 | 97.740456 | 7 |
CCATACC | 48970 | 0.0 | 96.97446 | 9 |
TTCACGA | 4210 | 0.0 | 72.0162 | 3 |
GTTCACG | 4115 | 0.0 | 71.97523 | 2 |
TCACGAC | 4195 | 0.0 | 71.43817 | 4 |
CTTAGCG | 29310 | 0.0 | 59.50946 | 6 |
TTAGCGG | 29665 | 0.0 | 58.83632 | 7 |
AGCGGTG | 29860 | 0.0 | 57.883144 | 9 |
CGACTCT | 30960 | 0.0 | 57.19129 | 1 |
TAGCGGT | 30635 | 0.0 | 56.704823 | 8 |
GTGCTCG | 2265 | 0.0 | 53.388416 | 1 |
TCTTAGC | 32790 | 0.0 | 53.321793 | 5 |
CACGACG | 10015 | 0.0 | 52.963882 | 1 |