Basic Statistics
Measure | Value |
---|---|
Filename | P1234_1018_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 30833924 |
Sequences flagged as poor quality | 0 |
Sequence length | 123 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGAGATCGGG | 74922 | 0.24298561545393962 | No Hit |
ATCCAAGTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGA | 71063 | 0.2304701795334256 | No Hit |
GTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGAGATCGG | 41283 | 0.13388824594625062 | No Hit |
TCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCTCCGCCAGGGCCGTGG | 40335 | 0.13081371024978852 | No Hit |
CATCCAAGTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACG | 36850 | 0.11951122406606439 | No Hit |
TGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGGAT | 35217 | 0.11421510930623036 | No Hit |
ACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGAGATCGGGC | 33565 | 0.10885737410522255 | No Hit |
GCCGCAAGTGCGTTCGAAGTGTCGATGATCAATGTGTCCTGCAATTCACA | 31180 | 0.10112238714735108 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTCGGTA | 2190 | 0.0 | 56.40864 | 1 |
GCGTACG | 2305 | 0.0 | 53.594326 | 1 |
GTCGCAA | 2570 | 0.0 | 50.573982 | 1 |
GTTATCG | 5540 | 0.0 | 48.695126 | 3 |
TTATCGG | 5720 | 0.0 | 47.16276 | 4 |
CGGAATT | 5705 | 0.0 | 45.225075 | 8 |
ACCGTCC | 24020 | 0.0 | 45.13325 | 7 |
TCGGTAT | 2810 | 0.0 | 44.99597 | 2 |
CACCGTC | 24625 | 0.0 | 44.40741 | 6 |
TCGGAAT | 5775 | 0.0 | 44.17013 | 7 |
CCCGGTA | 5875 | 0.0 | 44.114956 | 9 |
CCGTCCT | 24970 | 0.0 | 43.43977 | 8 |
CGTCCTG | 25345 | 0.0 | 42.61175 | 9 |
CGTTATC | 5790 | 0.0 | 42.360554 | 2 |
CCACCGT | 27910 | 0.0 | 39.228012 | 5 |
CGGACTA | 2405 | 0.0 | 38.212967 | 2 |
CGACCTG | 10160 | 0.0 | 38.06309 | 8 |
CAAGTAC | 54965 | 0.0 | 37.550312 | 4 |
TCGCAAG | 3415 | 0.0 | 37.19591 | 2 |
TGTACGA | 1940 | 0.0 | 37.113297 | 2 |