FastQCFastQC Report
Thu 23 Jun 2016
P1234_1003_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameP1234_1003_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33724069
Sequences flagged as poor quality0
Sequence length123
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCGGAA5532961.6406561141836116No Hit
GGTTTAGTGAGGCCCTCGGATCGGCCCCGCCGGGGTCGGCCCACGGCCCT1135790.33678913419374157No Hit
CGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGC967070.28675958408221736No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTC809860.24014302663181009No Hit
GTAGCCCCGGGAGGAACCCGGGGCCGCAAGTGCGTTCGAAGTGTCGATGA556810.1651075971882278No Hit
GGAGCAGAAGGGCAAAAGCTCGCTTGATCTTGATTTTCAGTACGAATACA540010.16012599191396507No Hit
GCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG487610.14458812784424085No Hit
GGATGGTTTAGTGAGGCCCTCGGATCGGCCCCGCCGGGGTCGGCCCACGG482460.14306102860838057No Hit
GCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCA429970.12749647736754421No Hit
CAGGGAGGACAGAAACCTCCCGTGGAGCAGAAGGGCAAAAGCTCGCTTGA428720.12712582221320923No Hit
CGATTGGATGGTTTAGTGAGGCCCTCGGATCGGCCCCGCCGGGGTCGGCC373910.11087333500592707No Hit
GGGCAAAAGCTCGCTTGATCTTGATTTTCAGTACGAATACAGACCGTGAA366400.10864643883868226No Hit
GTTTAGTGAGGCCCTCGGATCGGCCCCGCCGGGGTCGGCCCACGGCCCTG353660.10486872150569969No Hit
GGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAG340570.10098722072950331No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCTACG653250.0109.186651
TCTACGG676750.0105.3088462
TACGGCC684800.0103.857664
CTACGGC715450.099.6696553
CGGCCAT727900.097.6472856
ACGGCCA739200.096.134865
GCCATAC745500.094.719078
GGCCATA751550.094.643467
CCATACC763750.092.1421669
CGACTCT223850.057.6463661
TTAGCGG222850.055.778547
CTTAGCG237400.052.6065376
GCGCGGT125900.049.412476
TAGCCCC154950.047.238142
AACGCGC744250.047.2350222-23
GAACGCG773800.046.8729820-21
AGCGGTG270600.045.8696949
CATACCA773650.045.8175810-11
GTAGCCC159400.045.7361451
CGTTCGA80150.045.18387632-33