FastQCFastQC Report
Thu 23 Jun 2016
P1234_1014_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameP1234_1014_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46909968
Sequences flagged as poor quality0
Sequence length123
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGAGATCGGG1150970.245357234095747No Hit
ATCCAAGTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGA1135890.24214256552040284No Hit
TGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGGAT786930.16775325875302238No Hit
CATCCAAGTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACG600580.12802822632494654No Hit
GTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGAGATCGG547390.11668948484467097No Hit
GTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGGA474460.10114268251046345No Hit
ACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGAGATCGGGC470240.10024308692770799No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTTATCG55300.039.998653
CGATTAC82100.039.477987
TTATCGA83200.039.104813
TATCGAT85450.038.3490144
GCGTACG27950.038.3316041
CAAGTAC725450.038.153284
CGACCTG194000.037.5757688
GTCGCAA29000.035.9343451
ACCGTCC180000.035.5576557
AGTACTA779250.035.5357256
TTATCGG63000.035.295664
TCCGACC214350.034.5826766
CGTTATC61050.034.1334532
TTCCGAC215950.034.0603565
TTTCCGA216000.033.8637054
CCGACCT217050.033.800737
GTACTAA820750.033.751847
ATCGATT100150.032.8945925
AAGTACT853050.032.548345
TTTATCG100250.032.405932