FastQCFastQC Report
Thu 23 Jun 2016
P1234_1007_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameP1234_1007_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21758318
Sequences flagged as poor quality0
Sequence length123
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCGGAA7509913.451512198691094No Hit
CGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGC5397702.4807524184544043No Hit
GACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGCT1672940.7688737704817072No Hit
AGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGA1251920.5753753575988731No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTC1142280.5249854331571034No Hit
AGGGAGGACAGAAACCTCCCGTGGAGCAGAAGGGCAAAAGCTCGCTTGAT789060.36264751714723537No Hit
GTAGCCCCGGGAGGAACCCGGGGCCGCAAGTGCGTTCGAAGTGTCGATGA656050.30151687276562467No Hit
GCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCA564380.2593858587782383No Hit
GGTTTAGTGAGGCCCTCGGATCGGCCCCGCCGGGGTCGGCCCACGGCCCT536160.24641610624497723No Hit
CTCGTACGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAA521110.23949921129013738No Hit
GCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG510330.23454478420620564No Hit
ATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCGGAAGCTAAGCAGG505720.23242605425658364No Hit
ACCGATTGGATGGTTTAGTGAGGCCCTCGGATCGGCCCCGCCGGGGTCGG504910.232053782833765No Hit
GGATCGGCCCCGCCGGGGTCGGCCCACGGCCCTGGCGGAGCGCTGAGAAG442770.20349458997703773No Hit
AAGGCGAGCTCAGGGAGGACAGAAACCTCCCGTGGAGCAGAAGGGCAAAA438050.20132530464900827No Hit
GTACGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGC435840.20030960113736734No Hit
CGGCGGGGGACCGTCCCCCGACCGGCGACCGGCCGCCGCCGGGCGCATTT354060.16272397526316143No Hit
CCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGT343030.15765464959193995No Hit
CGTACGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACG333310.15318739251811653No Hit
TACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCA282640.1298997468462406No Hit
AACGCGACCGATCCCGGAGAAGCCGGCGGGAGCCCCGGGGAGAGTTCTCT271540.12479824957057802No Hit
ACGGACAGGATTGACAGATTGATAGCTCTTTCTCGATTCCGTGGGTGGTG267700.12303340726980826No Hit
GGAGCAGAAGGGCAAAAGCTCGCTTGATCTTGATTTTCAGTACGAATACA267200.12280361009522887No Hit
AGAAGGGCAAAAGCTCGCTTGATCTTGATTTTCAGTACGAATACAGACCG261920.12037695193167046No Hit
ACGATCCTTCTGACCTTTTGGGTTTTAAGCAGGAGGTGTCAGAAAAGTTA253320.11642444052890484No Hit
GGGGTCGGCGGGGGACCGTCCCCCGACCGGCGACCGGCCGCCGCCGGGCG243220.11178253760240107No Hit
ACCCTGAACGCGCCCGATCTCGTCTGATCTCGGAAGCTAAGCAGGGTCGG239030.10985683727942573No Hit
AGTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTCCTTTGGTCGCT227220.10442902801586042No Hit
GGGGAACCTGGCGCTAAACCATTCGTAGACGACCTGCTTCTGGGTCGGGG226790.10423140244572213No Hit
GGATGGTTTAGTGAGGCCCTCGGATCGGCCCCGCCGGGGTCGGCCCACGG225130.10346847582611855No Hit
ATTCGTAGACGACCTGCTTCTGGGTCGGGGTTTCGTACGTAGCAGAGCAG218310.10033404236485559No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTACGG959050.0111.0591052
TACGGCC973250.0109.10264
GTCTACG983050.0108.6983261
CGGCCAT995050.0106.389446
GCCATAC1008250.0104.436098
CTACGGC1022050.0104.270493
ACGGCCA1026900.0103.2141345
GGCCATA1030850.0102.762217
CCATACC1042800.0100.841499
GCGCGGT89750.081.160626
GTAGCCC120900.078.613751
CGACTCT957550.077.4110951
TTCACGA35700.075.7617653
CGGTTCA61900.075.215092
TAGCCCC126050.075.123782
GTTCACG36300.074.1876452
CGCGGTG101400.071.66287
GCGACCT294700.070.706652
TTAGCGG1073950.067.9615867
CTTAGCG1081850.067.784196