FastQCFastQC Report
Thu 23 Jun 2016
P1234_1002_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameP1234_1002_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31080150
Sequences flagged as poor quality0
Sequence length123
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCGGAA5266661.6945413712610782No Hit
CGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGC963460.3099920688928464No Hit
GGTTTAGTGAGGCCCTCGGATCGGCCCCGCCGGGGTCGGCCCACGGCCCT943650.3036182257807636No Hit
GTAGCCCCGGGAGGAACCCGGGGCCGCAAGTGCGTTCGAAGTGTCGATGA632150.20339348426568082No Hit
GCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG534290.1719071497402683No Hit
GGATGGTTTAGTGAGGCCCTCGGATCGGCCCCGCCGGGGTCGGCCCACGG430800.1386093696458994No Hit
GGAGCAGAAGGGCAAAAGCTCGCTTGATCTTGATTTTCAGTACGAATACA427830.13765377580224034No Hit
CAGGGAGGACAGAAACCTCCCGTGGAGCAGAAGGGCAAAAGCTCGCTTGA393240.12652448588568588No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTC387470.12466799548908225No Hit
CGATTGGATGGTTTAGTGAGGCCCTCGGATCGGCCCCGCCGGGGTCGGCC354060.11391836911984014No Hit
GGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAG334840.10773435778141355No Hit
GTTTAGTGAGGCCCTCGGATCGGCCCCGCCGGGGTCGGCCCACGGCCCTG326150.1049383609795963No Hit
CCGATTGGATGGTTTAGTGAGGCCCTCGGATCGGCCCCGCCGGGGTCGGC322100.10363527846551576No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCTACG616850.0107.997251
TCTACGG637400.0104.359582
TACGGCC643900.0103.142794
CTACGGC673950.098.7865753
CGGCCAT688900.096.3650746
ACGGCCA701450.094.688545
GGCCATA710750.093.4423457
GCCATAC706400.093.22148
CCATACC725700.090.444379
CGACTCT218850.057.842551
TTAGCGG229700.053.0715267
GCGCGGT130750.051.912376
CTTAGCG244150.050.002996
TAGCCCC157750.048.8439142
GTAGCCC158150.048.6465031
AACGCGC710750.046.32124322-23
GAACGCG738450.045.9006720-21
TAGCGGT268000.045.3332448
CGTTCGA84800.045.1854232-33
CATACCA739450.044.78424510-11