FastQCFastQC Report
Thu 23 Jun 2016
P1234_1018_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameP1234_1018_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30833924
Sequences flagged as poor quality0
Sequence length123
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCGGAA4390801.4240159637158085No Hit
CGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGC629480.20415176478997613No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCTACG637300.0112.203681
TCTACGG661950.0107.601792
CTACGGC670750.0105.867863
TACGGCC670350.0105.007324
CGGCCAT683850.0102.6124656
ACGGCCA699450.0100.50435
GCCATAC717500.097.030058
GGCCATA766900.091.86487
CCATACC757900.091.310669
TCACGAC63200.064.8864754
GTTCACG63150.062.8102532
TTCACGA67400.060.756433
CACGACG140650.056.235821
GTGCTCG38250.055.2855031
ACGCCGT70600.053.004444110-111
TCGCGTA59300.052.442905108-109
CGCGTAT61200.052.235714110-111
ATCGCGT60100.051.694977108-109
TCGGACG95600.050.173775106-107
ATGCGCG65950.049.808384104-105