FastQCFastQC Report
Thu 23 Jun 2016
P1234_1019_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameP1234_1019_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16902605
Sequences flagged as poor quality0
Sequence length123
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCGGAA3004491.777530741563209No Hit
CGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGC1220960.7223501939493943No Hit
GACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGCT452980.2679941937943885No Hit
AGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGA211330.12502806520060075No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTC209880.12417020926655979No Hit
GAGCACACGTCTGAACTCCAGTCACCGGCTATGATCTCGTATGCCGTCTT200670.11872134502344461TruSeq Adapter, Index 7 (96% over 28bp)

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCTACG438700.0112.250961
TCTACGG450800.0108.771512
CTACGGC462600.0105.719163
TACGGCC459200.0105.547834
ACGGCCA474700.0101.805535
GCCATAC473100.0101.4391258
GGCCATA495100.097.759217
CCATACC497000.096.196739
CGGCCAT509300.094.862356
TTCACGA43550.073.908363
GTTCACG44950.068.487462
TCACGAC49100.065.554164
CTTAGCG302250.059.562916
CGACTCT312900.058.826491
TTAGCGG307250.058.4980437
AGCGGTG305100.057.875399
TAGCGGT316500.056.2152568
GACTCTT343600.053.451452
ACTCTTA343150.053.4364283
TCTTAGC339500.053.3911825