FastQCFastQC Report
Thu 23 Jun 2016
P1234_1009_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameP1234_1009_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20462961
Sequences flagged as poor quality0
Sequence length123
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCCAAGTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGA995540.4865082819636904No Hit
TACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGAGATCGGG994130.4858192321238359No Hit
GTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGAGATCGG480450.23479006777171693No Hit
CATCCAAGTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACG422000.20622626412668235No Hit
ACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGAGATCGGGC412540.20160327725787094No Hit
TCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCTCCGCCAGGGCCGTGG348560.1703370299146834No Hit
CCATCCAAGTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGAC301360.14727096435359477No Hit
TCCTGCAATTCACATTAATTCTCGCAGCTAGCTGCGTTCTTCATCGACGC281150.13739458331567947No Hit
GTCCAAGTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGA262950.1285004648154292No Hit
CCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCC240830.11769069002281732No Hit
TGCTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGAGATCGGG240760.11765648187473943No Hit
CCAAGTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGAGA239900.11723621034121112No Hit
CTGCAATTCACATTAATTCTCGCAGCTAGCTGCGTTCTTCATCGACGCAC235650.1151592870650538No Hit
GCCGCAAGTGCGTTCGAAGTGTCGATGATCAATGTGTCCTGCAATTCACA224480.1097006440074826No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTCGACG25250.057.267191
TCGACGA30200.048.2610552
GTTATCG29800.047.5190243
CGCCCAA30100.047.4562721
CCAACGT74150.045.9282883
CCCGGTA70900.044.971239
ACCGTCC121300.044.9031227
CAACGTG78550.044.6966064
CCCAACG67000.044.5553442
TCGTCCG26750.041.9997754
CGTTATC33400.041.8847432
CCACCGT134400.041.403595
CACCGTC133450.041.3866466
CAAGTAC596550.041.2172164
CCGTCCT133350.040.802048
TTATCGG34450.040.765384
CGAGGAT46750.040.1726266
ACCCGGT79900.040.0527658
CGTCCTG137400.039.8541569
AACGTGG88750.039.7562755