FastQCFastQC Report
Thu 23 Jun 2016
P1234_1019_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameP1234_1019_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16902605
Sequences flagged as poor quality0
Sequence length123
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCCAAGTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGA540470.31975544598007233No Hit
TACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGAGATCGGG496790.29391327549806673No Hit
TCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCTCCGCCAGGGCCGTGG341320.20193337062541544No Hit
TCCTGCAATTCACATTAATTCTCGCAGCTAGCTGCGTTCTTCATCGACGC326010.19287559521150732No Hit
CTGCAATTCACATTAATTCTCGCAGCTAGCTGCGTTCTTCATCGACGCAC300560.17781874450713367No Hit
TGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGGAT256060.15149144170380838No Hit
CATCCAAGTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACG241010.14258748873324556No Hit
GTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGAGATCGG236410.13986601473559845No Hit
ACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGAGATCGGGC211090.12488607525289741No Hit
GCCGCAAGTGCGTTCGAAGTGTCGATGATCAATGTGTCCTGCAATTCACA202900.12004066828752136No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGTACGA10700.056.8911632
GTTATCG35450.052.986243
CGGAATT34900.052.300968
GTCGGTA11050.051.921571
TTATCGG36900.050.4280934
CCCGGTA49700.048.4968539
TCGTTAT33350.048.2748371
ACCGTCC189900.046.919447
CACCGTC192300.046.7933926
CGTTATC36350.046.3749352
CCGTCCT195250.045.7539338
GCGTACG24150.045.3323751
GATAGTC163950.044.8632245
TATCGAT35900.044.6609424
TCGGAAT41850.044.5936627
TTATCGA35300.044.5914843
CGTCCTG199200.044.5228169
TCGGTAT14300.042.568912
CGATTAC36850.042.547617
CCACCGT211950.042.4057165