FastQCFastQC Report
Thu 23 Jun 2016
P1234_1012_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameP1234_1012_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26629350
Sequences flagged as poor quality0
Sequence length123
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCTCCGCCAGGGCCGTGG1123650.42195922919635664No Hit
TGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGGAT595300.22355033074408498No Hit
TACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGAGATCGGG469930.1764706986839709No Hit
ATCCAAGTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGA439740.1651335838088425No Hit
GTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGGA371160.13938004495040246No Hit
TCCTGCAATTCACATTAATTCTCGCAGCTAGCTGCGTTCTTCATCGACGC361350.13569613978561249No Hit
CTGCAATTCACATTAATTCTCGCAGCTAGCTGCGTTCTTCATCGACGCAC354340.1330637060236168No Hit
ACTTCCTCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCTCCGCCAGGG310580.1166307100999461No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTTATCG47850.058.3353583
TTATCGG52450.054.2220044
CGGAATT52700.053.2864348
CGTTATC48400.051.8862042
TCGGAAT56150.050.8455357
GATAGTC404550.050.1772775
TTACCCG69650.048.2176676
TCGTTAT48250.047.564731
CGACCTG102450.046.6547788
TACCCGC73250.045.844487
AGATAGT445250.045.7230644
CTAGATA404850.045.7201542
CGGACTA19500.045.6298332
ATAGTCA453100.045.375686
TAGATAG446750.044.9419143
TAGTCAA466800.043.8902557
GCGTACG26650.043.717181
TTCCGAC114600.042.5339165
CCCGGTA53800.042.3003129
GTCGTTT35300.042.2923431