FastQCFastQC Report
Thu 23 Jun 2016
P1234_1018_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameP1234_1018_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30833924
Sequences flagged as poor quality0
Sequence length123
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGAGATCGGG749220.24298561545393962No Hit
ATCCAAGTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGA710630.2304701795334256No Hit
GTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGAGATCGG412830.13388824594625062No Hit
TCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCTCCGCCAGGGCCGTGG403350.13081371024978852No Hit
CATCCAAGTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACG368500.11951122406606439No Hit
TGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGGAT352170.11421510930623036No Hit
ACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGAGATCGGGC335650.10885737410522255No Hit
GCCGCAAGTGCGTTCGAAGTGTCGATGATCAATGTGTCCTGCAATTCACA311800.10112238714735108No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCGGTA21900.056.408641
GCGTACG23050.053.5943261
GTCGCAA25700.050.5739821
GTTATCG55400.048.6951263
TTATCGG57200.047.162764
CGGAATT57050.045.2250758
ACCGTCC240200.045.133257
TCGGTAT28100.044.995972
CACCGTC246250.044.407416
TCGGAAT57750.044.170137
CCCGGTA58750.044.1149569
CCGTCCT249700.043.439778
CGTCCTG253450.042.611759
CGTTATC57900.042.3605542
CCACCGT279100.039.2280125
CGGACTA24050.038.2129672
CGACCTG101600.038.063098
CAAGTAC549650.037.5503124
TCGCAAG34150.037.195912
TGTACGA19400.037.1132972