FastQCFastQC Report
Thu 23 Jun 2016
P1234_1013_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameP1234_1013_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences59012592
Sequences flagged as poor quality0
Sequence length123
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCGGAA10766841.824498744268003No Hit
CGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGC2405570.40763672946275603No Hit
GACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGCT870530.14751597421784152No Hit
GGAGCAGAAGGGCAAAAGCTCGCTTGATCTTGATTTTCAGTACGAATACA595410.10089541567670846No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCTACG1314500.0111.750141
TCTACGG1359150.0107.825412
TACGGCC1367450.0106.4489754
CTACGGC1380550.0106.098993
CGGCCAT1391650.0104.322956
ACGGCCA1423350.0102.029615
GCCATAC1461600.098.670438
GGCCATA1539450.094.450237
CCATACC1532150.093.9173369
TTAGCGG582000.055.241357
CTTAGCG596250.054.1960226
CACGACG146550.053.813061
CGACTCT612650.053.482631
AGCGGTG602500.053.0400739
TAGCGGT606800.052.8856168
GAACGCG1409900.051.98531720-21
AACGCGC1408500.050.38646722-23
TCGCGTA56050.049.43346108-109
CGCGTAT57450.049.115906110-111
TCGGACG135100.048.799885106-107