FastQCFastQC Report
Thu 23 Jun 2016
P1234_1007_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameP1234_1007_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21758318
Sequences flagged as poor quality0
Sequence length123
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCTCCGCCAGGGCCGTGG1386440.6371999894477137No Hit
CTGCAATTCACATTAATTCTCGCAGCTAGCTGCGTTCTTCATCGACGCAC1324150.6085718574386126No Hit
TACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGAGATCGGG1137190.5226460979198851No Hit
ATCCAAGTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGA1123810.5164967255281405No Hit
TCCTGCAATTCACATTAATTCTCGCAGCTAGCTGCGTTCTTCATCGACGC1112760.5114182079699359No Hit
TGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGGAT663570.30497302227129874No Hit
GCAATTCACATTAATTCTCGCAGCTAGCTGCGTTCTTCATCGACGCACGA654340.3007309664285631No Hit
ATTCACATTAATTCTCGCAGCTAGCTGCGTTCTTCATCGACGCACGAGCC652580.2999220803740436No Hit
GTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGAGATCGG566540.26037858257242125No Hit
ACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGAGATCGGGC480580.2208718523187316No Hit
GCCGCAAGTGCGTTCGAAGTGTCGATGATCAATGTGTCCTGCAATTCACA475610.21858766840341243No Hit
CTACAGCACCCGGTATTCCCAGGCGGTCTCCCATCCAAGTACTAACCAGG472080.21696530035088193No Hit
ACTTCCTCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCTCCGCCAGGG460400.21159723835270725No Hit
CATCCAAGTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACG418800.19247811342770152No Hit
AGGCGGTCTCCCATCCAAGTACTAACCAGGCCCGACCCTGCTTAGCTTCC416290.19132453161131296No Hit
GTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGGA392360.18032643883594313No Hit
CCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCC388610.17860296002659765No Hit
GCTTAAAACCCAAAAGGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTC380950.1750824673120413No Hit
CAGGCGGTCTCCCATCCAAGTACTAACCAGGCCCGACCCTGCTTAGCTTC369330.16974198097481616No Hit
AATTCACATTAATTCTCGCAGCTAGCTGCGTTCTTCATCGACGCACGAGC361210.16601007485964678No Hit
CTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAG339900.15621611927907295No Hit
GGCCGCAAGTGCGTTCGAAGTGTCGATGATCAATGTGTCCTGCAATTCAC337990.15533829407217967No Hit
GGGGCCGCAAGTGCGTTCGAAGTGTCGATGATCAATGTGTCCTGCAATTC335460.1541755203688079No Hit
CCATCCAAGTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGAC334470.1537205219631407No Hit
CCTGCAATTCACATTAATTCTCGCAGCTAGCTGCGTTCTTCATCGACGCA334350.15366537064124167No Hit
TGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGG322380.14816402628181094No Hit
GTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACGAGG300560.13813567758316614No Hit
GTCCAAGTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGA298490.13718431728040742No Hit
CCGCCGGGCCTTCCCAGCCGTCCCGGAGCCGGTCGCGGCGCACCGCCGCG297660.13680285397060565No Hit
GCGGTCTCCCATCCAAGTACTAACCAGGCCCGACCCTGCTTAGCTTCCGA285170.13106252054961234No Hit
TGGGTTGAGGTTGTGCTTCTTCAGGAAGTCCTTCAGCAGGCCACGCTCGG275400.12657228375833096No Hit
TGCTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGAGATCGGG273380.1256439031730302No Hit
CCAGTCAAACTCCCCACCTGGCACTGTCCCCGGAGCGGGTCGCGCCCGGC269170.12370901096307167No Hit
TGCAATTCACATTAATTCTCGCAGCTAGCTGCGTTCTTCATCGACGCACG257860.11851099887408575No Hit
CTCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCTCCGCCAGGGCCGTG256840.11804221263794379No Hit
CTTCACAAAGAAAAGAGAACTCTCCCCGGGGCTCCCGCCGGCTTCTCCGG253070.11630954194161516No Hit
CGGGGCCGCAAGTGCGTTCGAAGTGTCGATGATCAATGTGTCCTGCAATT247650.11381854056917451No Hit
TGCTTAAAACCCAAAAGGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGT246670.1133681381069989No Hit
CCTTGTGTCGAGGGCTGACTTTCAATAGATCGCAGCGAGGGAGCTGCTCT245140.11266495875278594No Hit
TGGTGGACTGGTAGGTGGAAGAATCCTCAGGGTTGAAGCGGTTGTGGTTG244650.11243975752169813No Hit
GTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGGATCG242330.11137349863164973No Hit
CTTAGGACACCTGCGTTACCGTTTGACAGGTGTACCGCCCCAGTCAAACT239900.11025668436319387No Hit
TACAGCACCCGGTATTCCCAGGCGGTCTCCCATCCAAGTACTAACCAGGC236120.10851941772337366No Hit
AGTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGAGATCG234250.10765997629044671No Hit
CCAAGTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGAGA222250.10214484410054123No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGTACGA16100.069.8029252
GTTATCG59750.066.7943653
CGGAATT60400.065.768858
GTCGGTA14300.065.092851
TCGTTAT51900.064.182581
CGCCCAA29350.064.027881
TTATCGG63000.063.9044724
TCGGTAT15050.063.0052532
CCAACGT82150.061.617193
CGGACTA17900.061.1486472
CGTTATC58300.060.9422342
GTCGTTT21450.060.043721
CAACGTG88150.060.0108074
TCGGAAT67300.059.808087
CCCAACG76800.057.69432
GCGTACG34300.056.665171
CCCGGTA135200.054.393139
AACGTGG98200.053.92745
TGCTAAC72650.053.506271
GCGGTCA52250.053.1960835