FastQCFastQC Report
Thu 23 Jun 2016
P1234_1004_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameP1234_1004_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31194060
Sequences flagged as poor quality0
Sequence length123
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCGGAA4063061.302510798530233No Hit
CGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGC2228860.7145142376465263No Hit
GCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG1045190.3350605852524487No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTC979830.31410787823066316No Hit
GACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGCT695240.22287576545021712No Hit
GGAGCAGAAGGGCAAAAGCTCGCTTGATCTTGATTTTCAGTACGAATACA666300.21359835814895528No Hit
CGGGGGGCCGGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCTTCCCG607990.19490569678970932No Hit
CGGCGGGGGACCGTCCCCCGACCGGCGACCGGCCGCCGCCGGGCGCATTT563410.18061451442999082No Hit
CAGGGAGGACAGAAACCTCCCGTGGAGCAGAAGGGCAAAAGCTCGCTTGA548960.17598222225641677No Hit
GGTTTAGTGAGGCCCTCGGATCGGCCCCGCCGGGGTCGGCCCACGGCCCT539350.17290150753060038No Hit
GCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCA523950.16796467019682593No Hit
CGGCCGGGCGCGACCCGCTCCGGGGACAGTGCCAGGTGGGGAGTTTGACT487120.1561579351966368No Hit
CCCGCGGACGCTACGCCGCGACGAGTAGGAGGGCCGCTGCGGTGAGCCTT468010.1500317688688167No Hit
GGGCAAAAGCTCGCTTGATCTTGATTTTCAGTACGAATACAGACCGTGAA450850.14453072155403945No Hit
GGGGGGCCGGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCTTCCCGT436630.13997216136661914No Hit
GTAGCCCCGGGAGGAACCCGGGGCCGCAAGTGCGTTCGAAGTGTCGATGA428530.13737551315859492No Hit
GAGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGCGCGCCGGCCGGGC411100.13178791090355024No Hit
GGGACCGGGGTCCGGTGCGGAGTGCCCTTCGTCCTGGGAAACGGGGCGCG378940.12147825579613555No Hit
GGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGCGCGCCGGCCGGGCGC329220.10553932383280662No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCTACG464200.0109.358981
TCTACGG487400.0104.177512
TACGGCC504900.0100.208034
CTACGGC510850.099.395373
CGGCCAT514200.098.104846
ACGGCCA535100.094.37665
GCCATAC542600.092.116278
GGCCATA558800.090.3259667
CCATACC582200.085.559769
GCGCGGT190950.072.5306856
CTTAGCG456000.062.038256
TTAGCGG472250.059.7667967
CGCGGTG236050.058.82077
GACTCTT537700.053.2131042
AGCGGTG529650.053.211189
ACTCTTA539300.052.957743
CTCTTAG581000.049.1568154
TCTTAGC585000.048.6003885
GCGACCT270500.047.5759052
CGACTCT619900.047.184111