FastQCFastQC Report
Thu 23 Jun 2016
P1234_1021_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameP1234_1021_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28300555
Sequences flagged as poor quality0
Sequence length123
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGAGATCGGG771910.2727543682447217No Hit
ATCCAAGTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGA761220.2689770571637199No Hit
GTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGAGATCGG387320.13685950681885922No Hit
CATCCAAGTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACG383330.13544964047524863No Hit
TCCTGCAATTCACATTAATTCTCGCAGCTAGCTGCGTTCTTCATCGACGC343390.12133684304071068No Hit
ACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGAGATCGGGC320260.11316385844729901No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACCGTCC168550.043.978247
CACCGTC172650.043.3428046
GTCGCAA23350.042.1217651
CCGTCCT177750.041.7682088
CCCGGTA48000.041.0745249
CGTCCTG179600.040.9135489
CGACCTG93950.039.480838
CAAGTAC526800.039.42154
GTCGGTA18000.039.0294951
GTTATCG41950.038.777623
TCCGACC99050.037.9812746
AGTACTA559000.036.957196
CCGACCT101000.036.9563677
CGTTATC41300.036.8487662
CCACCGT202800.036.7298165
GCGTACG24650.035.6252981
TCGGTAT19750.035.2678952
AAGTACT590050.035.1350565
TTATCGG46400.034.9329034
TTTCCGA107750.034.6478544