FastQCFastQC Report
Fri 26 Apr 2024
SAMPLE2_PE.primer_trim_2.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSAMPLE2_PE.primer_trim_2.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19160
Sequences flagged as poor quality0
Sequence length42-301
%GC38

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCCCCTATTAAACAGCCTGCACGTGTTTGAAAAACATTAGAACCTGTA5432.8340292275574113No Hit
CCAGCAACTGTTTGTGGACCTAAAAAGTCTACTAATTTGGTTAAAAACAA5382.8079331941544887No Hit
ACAGTATTCTTTGCTATAGTAGTCGGCATAGATGCTTTAATTCTAGAATT5062.640918580375783No Hit
ACTACCGAAGTTGTAGGAGACATTATACTTAAACCAGCAAATAATAGTTT4422.3068893528183714No Hit
CGACTACTAGCGTGCCTTTGTAAGCACAAGCTGATGAGTACGAACTTATG3111.6231732776617953No Hit
CACAAGTAGTGGCACCTTCTTTAGTCAAATTCTCAGTGCCACAAAATTCG3011.5709812108559498No Hit
ACTAGGTTCCATTGTTCAAGGAGCTTTTTAAGCTCTTCAACGGTAATAGT2941.534446764091858No Hit
AGCCTCATAAAACTCAGGTTCCCAATACCTTGAAGTGTTATCATTAGTAA2831.477035490605428No Hit
TGAAATGGTGAATTGCCCTCGTATGTTCCAGAAGAGCAAGGTTCTTTTAA2761.4405010438413361No Hit
GGTGTATACTGCTGCCGTGAACATGAGCATGAAATTGCTTGGTACACGGA2731.4248434237995826No Hit
GTACGCGTTCCATGTGGTCATTCAATCCAGAAACTAACATTCTTCTCAAC2641.3778705636743214No Hit
AGCAAAATGTTGGACTGAGACTGACCTTACTAAAGGACCTCATGAATTTT2551.3308977035490606No Hit
AAGGTGTCTGCAATTCATAGCTCTTTTCAGAACGTTCCGTGTACCAAGCA2541.325678496868476No Hit
CATCCAGATTCTGCCACTCTTGTTAGTGACATTGACATCACTTTCTTAAA2471.289144050104384No Hit
ACACAGACCATTCCAGTAGCAGTGACAATATTGCTTTGCTTGTACAGTAA2451.278705636743215No Hit
AGTGAAATTGGGCCTCATAGCACATTGGTAAACACCAGATGGTGAACCAT2371.2369519832985387No Hit
TGAGGCTGGTTCTAAATCACCCATTCAGTACATCGATATCGGTAATTATA2301.2004175365344467No Hit
TCCCATCTGGTAAAGTTGAGGGTTGTATGGTACAAGTAACTTGTGGTACA2301.2004175365344467No Hit
AGTTTCCACACAGACAGGCATTAATTTGCGTGTTTCTTCTGCATGTGCAA2261.1795407098121085No Hit
AGGTCTTCCTTGCCATGTTGAGTGAGAGCGGTGAACCAAGACGCAGTATT2131.1116910229645094No Hit
ACCTGAAAGTCAACGAGATGAAACATCTGTTGTCACTTACTGTACAAGCA2121.1064718162839249No Hit
AGGAATTACTTGTGTATGCTGCTGACCCTGCTATGCACGCTGCTTCTGGT2001.0438413361169103No Hit
CTTTTCTCCAAGCAGGGTTACGTGTAAGGAATTCTCTTACCACGCCTATT1951.0177453027139876No Hit
CGGTAATAAAGGAGCTGGTGGCCATAGTTACGGCGCCGATCTAAAGTCAT1900.9916492693110648No Hit
TAACATGTTGTGCCAACCACCATAGAATTTGCTTGTTCCAATTACTACAG1890.98643006263048No Hit
TGACGATGACTTGGTTAGCATTAATACAGCCACCATCGTAACAATCAAAG1880.9812108559498955No Hit
GTTGATAAGTACTTTGATTGTTACGATGGTGGCTGTATTAATGCTAACCA1880.9812108559498955No Hit
TGATTTGAGTGTTGTCAATGCCAGATTACGTGCTAAGCACTATGTGTACA1780.9290187891440501No Hit
TGCCACAGTACGTCTACAAGCTGGTAATGCAACAGAAGTGCCTGCCAATT1720.8977035490605427No Hit
GTTGAGAGCAAAATTCATGAGGTCCTTTAGTAAGGTCAGTCTCAGTCCAA1710.8924843423799582No Hit
AAGAGTCCTGTTACATTTTCAGCTTGTAAAGTTGCCACATTCCTACGTGG1680.8768267223382045No Hit
ACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1670.87160751565762No Hit
TCACGCATGATGTTTCATCTGCAATTAACAGGCCACAAATAGGCGTGGTA1620.8455114822546973No Hit
ACTGTAGTGACAAGTCTCTCGCAACTTCATCACTAATAAATGTACTACCA1610.8402922755741128No Hit
TCATCAGATTCAACTTGCATGGCATTGTTAGTAGCCTTATTTAAGGCTCC1550.8089770354906054No Hit
TGTCGCTTCCAAGAAAAGGACGAAGATGACAATTTAATTGATTCTTACTT1520.7933194154488519No Hit
AACCTTTCCACATACCGCAGACGGTACAGACTGTGTTTTTAAGTGTAAAA1500.7828810020876826No Hit
TGTTGACACTGACTTAACAAAGCCTTACATTAAGTGGGATTTGTTAAAAT1470.767223382045929No Hit
CATCAGGAGATGCCACAACTGCTTATGCTAATAGTGTTTTTAACATTTGT1460.7620041753653445No Hit
CATCTTTAAGATGTTGACGTGCCTCTGATAAGACCTCCTCCACGGAGTCT1430.7463465553235908No Hit
AGGCATGCCTTCTTACTGTACTGGTTACAGAGAAGGCTATTTGAACTCTA1430.7463465553235908No Hit
TGCACATCAGTAGTCTTACTCTCAGTTTTGCAACAACTCAGAGTAGAATC1420.7411273486430062No Hit
AGGTGTGAGTAAACTGTTACAAACAACAACAGCAAGTTGCAAACAAAGTG1370.7150313152400836No Hit
GCAATTGTTTTTCAGCTATTTTGCAGTACATTTTATTAGTAATTCTTGGC1360.7098121085594989No Hit
GTTGAACCTTTCTACAAGCCGCATTAATCTTCAGTTCATCACCAATTATA1360.7098121085594989No Hit
GGCACATGGCTTTGAGTTGACATCTATGAAGTATTTTGTGAAAATAGGAC1290.673277661795407No Hit
ACACGTGGTGTTTATTACCCTGACAAAGTTTTCAGATCCTCAGTTTTACA1290.673277661795407No Hit
CCATGGCAGATTCCAACGGTACTATTACCGTTGAAGAGCTTAAAAAGCTC1250.6524008350730689No Hit
TAGATTACCAGAAGCAGCGTGCATAGCAGGGTCAGCAGCATACACAAGTA1200.6263048016701461No Hit
TGGTCAGAATAGTGCCATGGAGTGGCACGTTGAGAAGAATGTTAGTTTCT1180.6158663883089771No Hit
CACGTTCACCTAAGTTGGCGTATACGCGTAATATATCTGGGTTTTCTACA1180.6158663883089771No Hit
ACTCTGAACTCACTTTCCATCCAACTTTTGTTGTTTTTGTGGTAATAAAC1170.6106471816283925No Hit
GGAATTTGGTGCCACTTCTGCTGCTCTTCAACCTGAAGAAGAGCAAGAAG1150.6002087682672234No Hit
AATAACGGTCAAAGAGTTTTAACCTCTCTTCCGTGAAGTCATATTTTAAC1100.5741127348643006No Hit
TGCTGTAGTTGTCTCAAGGGCTGTTGTTCTTGTGGATCCTGCTGCAAATT1080.5636743215031316No Hit
CACCAGCTGTCCAACCTGAAGAAGAATCACCAGGAGTCAAATAACTTCTA1060.5532359081419624No Hit
ACAAACTGCCACCATCACAACCAGGCAAGTTAAGGTTAGATAGCACTCTA1020.5323590814196242No Hit
TGTTAAGCGTGTTGACTGGACTATTGAATATCCTATAATTGGTGATGAAC990.5167014613778707No Hit
CATGGCTGCATCACGGTCAAATTCAGATTTAGCCACATTCAAAGACTTCT980.511482254697286No Hit
CACAACTTGCGTGTGGAGGTTAATGTTGTCTACTGTTGTAAACACCTTAA970.5062630480167015No Hit
GCACAACTAATGGTGACTTTTTGCATTTCTTACCTAGAGTTTTTAGTGCA950.4958246346555324No Hit
AGGACTGGTATGATTTTGTAGAAAACCCAGATATATTACGCGTATACGCC940.49060542797494777No Hit
ACATTCTAACCATAGCTGAAATCGGGGCCATTTGTACAAGATTAATTATT930.48538622129436326No Hit
AATACAAGCACCAAGGTCACGGGGTGTCATGTTTTCAACTTTGTTATAGG880.4592901878914405No Hit
TGTTTATCACCCGCGAAGAAGCTATAAGACATGTACGTGCATGGATTGGC880.4592901878914405No Hit
ACTACAGTCAGCTTATGTGTCAACCTATACTGTTACTAGATCAGGCATTA850.44363256784968685No Hit
GCTGTTATGTACATGGGCACACTTTCTTATGAACAATTTAAGAAAGGTGT810.42275574112734865No Hit
ACCACTAGTAGATACACAAACACCAGCTTCTGATCTTTCACAAGTGCCGT810.42275574112734865No Hit
TGTCCAACTTAGGGTCAATTTCTGTACAAACAACACCATCCAATTTATAA790.4123173277661795No Hit
TGGTATGACAACCATTAGTTTGGCTGCTGTTGTAAGAGGTATTATGTTCA780.407098121085595No Hit
GTTCCCTTCCATCATATGCAGCTTTTGCTACTGCTCAAGAAGCTTATGAG730.38100208768267224No Hit
GTCCACACTCTCCTAGCACCATCATCATACACAGTTCTTGCTGTCATAAG690.36012526096033404No Hit
TGTCGCAAAATATACTCAACTGTGTCAATATTTAAACACATTAACATTAG680.35490605427974947No Hit
AATTTGGAAGAAGCTGCTCGGTATATGAGATCTCTCAAAGTGCCAGCTAC680.35490605427974947No Hit
TCAGGTGATGGCACAACAAGTCCTATTTCTGAACATGACTACCAGATTGG650.33924843423799583No Hit
TCAATAGCCGCCACTAGAGGAGCTACTGTAGTAATTGGAACAAGCAAATT640.33402922755741127No Hit
ACACACCACTGGTTGTTACTCACAATTTTGACTTCACTTTTAGTTTTAGT630.32881002087682676No Hit
TCTTTATAGCCACGGAACCTCCAAGAGCTAGCTTTTGTTGTATAAACCCA620.3235908141962422No Hit
ATCACATAGACAACAGGTGCGCTCAGGTCCTATTTTCACAAAATACTTCA620.3235908141962422No Hit
CAATTTTGTAATGATCCATTTTTGGGTGTTTATTACCACAAAAACAACAA610.31837160751565763No Hit
TTTGACTCCTTTGAGCACTGGCTCAGAGTCGTCTTCATCAAATTTGCAGC590.30793319415448855No Hit
TGGACAGTAAACTACGTCATCAAGCCAAAGACCGTTAAGTGTAGTTGTAC590.30793319415448855No Hit
TCCTTTGCAACCTGAATTAGACTCATTCAAGGAGGAGTTAGATAAATATT520.27139874739039666No Hit
TGCCAGAGATGTCACCTAAATCAACATCTGGTGATGTATGATTCTTAAAA460.24008350730688935No Hit
TGATAGAGACCTTTATGACAAGTTGCAATTTACAAGTCTTGAAATTCCAC460.24008350730688935No Hit
GTAATTGAGCAGGGTCGCCAATGTACACATAGTGCTTAGCACGTAATCTG430.22442588726513568No Hit
GGGCTATCATCTTATGTCCTTCCCTCAGTCAGCACCTCATGGTGTAGTCT420.21920668058455112No Hit
ACTTTTGAAGAAGCTGCGCTGTGCACCTTTTTGTTAAATAAAGAAATGTA410.21398747390396658No Hit
TTCTGAGTACTGTAGGCACGGCACTTGTGAAAGATCAGAAGCTGGTGTTT400.20876826722338201No Hit
GGTACCAACAGCTTCTCTAGTAGCATGACACCCCTCGACATCGAAGCCAA400.20876826722338201No Hit
TGCACAGGTGACAATTTGTCCACCGACAATTTCACAAGCACAGGTTGAGA400.20876826722338201No Hit
CAACCTTAGAAACTACAGATAAATCTTGGGATTTTATTATTTCAACAAAA400.20876826722338201No Hit
AGAGTCCAACCAACAGAATCTATTGTTAGATTTCCTAATATTACAAACTT400.20876826722338201No Hit
ACTTGTGTTCCTTTTTGTTGCTGCATTCAGTTGAATCACCACAAATGTAC400.20876826722338201No Hit
CATGGCTGCATCACGGTCAAATCAGATTTAGCCACATTCAAAGACTTCTT380.19832985386221297No Hit
ACCTAGACCACCACTTAACCGAAATTATGTCTTTACTGGTTATCGTGTAA380.19832985386221297No Hit
ACACTATGCGAGCAGAAGGGTAGTAGAGAGCTAGGCCAATAGCAAAATGA380.19832985386221297No Hit
CAGTACGTTTTTGCCGAGGCTTCTTAGAAGCCTCAGCAGCAGATTTCTTA370.19311064718162838No Hit
AACCAAAAACTTGTCCATTAGCACACAATGGAAAACTAATGGGTGGTTTA370.19311064718162838No Hit
ACCAGTACAGTAGGTTGCAATAGTGACATTAGTAGAGTTCAAATAGCCTT370.19311064718162838No Hit
AGTGCATTAACATTGGCCGTGACAGCTTGACAAATGTTAAAAACACTATT360.18789144050104384No Hit
TGGTGAAACTTCATGGCAGACGGGCGATTTTGTTAAAGCCACTTGCGAAT360.18789144050104384No Hit
ACGAAAGCAAGAAAAAGAAGTACGCTATTAACTATTAACGTACCTGTCTC350.18267223382045927No Hit
ATTGATGTTGACTTTCTCTTTTTGGAGTATTTCAAGAAGGTTGTCATTAA350.18267223382045927No Hit
GCCAACAACAACAAGGCCAAACTGTCACTAAGAAATCTGCTGCTGAGGCT330.17223382045929017No Hit
AGAGTTTCTTAGAGACGGTTGGGAAATTGTTAAATTTATCTCAACCTGTG330.17223382045929017No Hit
TACCGAAGTTGTAGGAGACATTATACTTAAACCAGCAAATAATAGTTTAA330.17223382045929017No Hit
GCTTCAACAGCTTCACTAGTAGGTTGTTCTAATGGTTGTAAATCACCAGT320.16701461377870563No Hit
CCTACCTCCCTTTGTTGTGTTGTAGTAAGCTAACGCATTGTCATCAGTGC320.16701461377870563No Hit
ACAGAATAAACACCAGGTAAGAATGAGTAAACTGGTGTTAAACAGAGTAC290.151356993736952No Hit
ATCAGAGGCTGCTCGTGTTGTACGATCAATTTTCTCCCGCACTCTTGAAA280.14613778705636743No Hit
GGTGTTGTTGGAGAAGGTTCCGAAGGTCTTAATGACAACCTTCTTGAAAT280.14613778705636743No Hit
TGAGGGAGCCTTGAATACACCAAAAGATCACATTGGCACCCGCAATCCTG280.14613778705636743No Hit
TTTGTGCTTTTTAGCCTTTCTGCTATTCCTTGTTTTAATTATGCTTATTA260.13569937369519833No Hit
GTTGTCCAACAATTACCTGAAACTTACTTTACTCAGAGTAGAAATTTACA250.1304801670146138No Hit
ACCACCAACCTTAGAATCAAGATTGTTAGAATTCCAAGCTATAACGCAGC240.12526096033402923No Hit
TGTTCGCATTCAACCAGGACAGACTTTTTCAGTGTTAGCTTGTTACAATG240.12526096033402923No Hit
ATGACAGCATCTGCCACAACACAGGCGAACTCATTTACTTCTGTACCGAG240.12526096033402923No Hit
TAGGCTCTGTTGGTGGGAATGTTTTGTATGCGTCAATATGCTTATTCAGC240.12526096033402923No Hit
TGCAAGAGATGGTTGTGTTCCCTTGAACATAATACCTCTTACAACAGCAG240.12526096033402923No Hit
ATTCTACACTCCAGGGACCACCTGGTACTGGTAAGAGTCATTTTGCTATT220.11482254697286012No Hit
CTACCGAAGTTGTAGGAGACATTATACTTAAACCAGCAAATAATAGTTTA220.11482254697286012No Hit
ATAAAGGAGCTGGTGGCCATAGTTACGGCGCCGATCTAAAGTCATTTGAC200.10438413361169101No Hit

[OK]Adapter Content

Adapter graph