FastQCFastQC Report
Fri 26 Apr 2024
SAMPLE3_SE.primer_trim.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSAMPLE3_SE.primer_trim.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46613
Sequences flagged as poor quality0
Sequence length40-301
%GC38

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACTACCGAAGTTGTAGGAGACATTATACTTAAACCAGCAAATAATAGTTT10622.278334370240062No Hit
CCAGCAACTGTTTGTGGACCTAAAAAGTCTACTAATTTGGTTAAAAACAA8811.8900306781370007No Hit
ACAGTATTCTTTGCTATAGTAGTCGGCATAGATGCTTTAATTCTAGAATT8141.746293952330895No Hit
ACTAGGTTCCATTGTTCAAGGAGCTTTTTAAGCTCTTCAACGGTAATAGT8021.7205500611417415No Hit
CGACTACTAGCGTGCCTTTGTAAGCACAAGCTGATGAGTACGAACTTATG7351.5768133353356357No Hit
TGAAATGGTGAATTGCCCTCGTATGTTCCAGAAGAGCAAGGTTCTTTTAA7231.5510694441464827No Hit
AGCCTCATAAAACTCAGGTTCCCAATACCTTGAAGTGTTATCATTAGTAA6721.4416579065925814No Hit
TGATTTGAGTGTTGTCAATGCCAGATTACGTGCTAAGCACTATGTGTACA6311.3536996116963078No Hit
CTTTTCTCCAAGCAGGGTTACGTGTAAGGAATTCTCTTACCACGCCTATT6211.33224636903868No Hit
CATCCAGATTCTGCCACTCTTGTTAGTGACATTGACATCACTTTCTTAAA6191.3279557205071548No Hit
GGTGTATACTGCTGCCGTGAACATGAGCATGAAATTGCTTGGTACACGGA6161.3215197477098664No Hit
AGCAAAATGTTGGACTGAGACTGACCTTACTAAAGGACCTCATGAATTTT6041.2957758565207131No Hit
CAGCCCCTATTAAACAGCCTGCACGTGTTTGAAAAACATTAGAACCTGTA5941.2743226138630854No Hit
GTACGCGTTCCATGTGGTCATTCAATCCAGAAACTAACATTCTTCTCAAC5931.2721772895973227No Hit
CACAAGTAGTGGCACCTTCTTTAGTCAAATTCTCAGTGCCACAAAATTCG5781.239997425610881No Hit
AGTGAAATTGGGCCTCATAGCACATTGGTAAACACCAGATGGTGAACCAT5531.1863643189668118No Hit
AGTTTCCACACAGACAGGCATTAATTTGCGTGTTTCTTCTGCATGTGCAA5501.1799283461695236No Hit
AAGGTGTCTGCAATTCATAGCTCTTTTCAGAACGTTCCGTGTACCAAGCA5481.1756376976379979No Hit
AGGAATTACTTGTGTATGCTGCTGACCCTGCTATGCACGCTGCTTCTGGT5211.1177139424624032No Hit
CGGTAATAAAGGAGCTGGTGGCCATAGTTACGGCGCCGATCTAAAGTCAT5211.1177139424624032No Hit
ACCTGAAAGTCAACGAGATGAAACATCTGTTGTCACTTACTGTACAAGCA5161.1069873211335894No Hit
ACACAGACCATTCCAGTAGCAGTGACAATATTGCTTTGCTTGTACAGTAA5131.100551348336301No Hit
TCCCATCTGGTAAAGTTGAGGGTTGTATGGTACAAGTAACTTGTGGTACA4771.0233196747688413No Hit
TGACGATGACTTGGTTAGCATTAATACAGCCACCATCGTAACAATCAAAG4570.9804131894535859No Hit
GTTGATAAGTACTTTGATTGTTACGATGGTGGCTGTATTAATGCTAACCA4510.9675412438590093No Hit
TAACATGTTGTGCCAACCACCATAGAATTTGCTTGTTCCAATTACTACAG4330.9289254070752795No Hit
AGGTCTTCCTTGCCATGTTGAGTGAGAGCGGTGAACCAAGACGCAGTATT4260.91390813721494No Hit
TGAGGCTGGTTCTAAATCACCCATTCAGTACATCGATATCGGTAATTATA3920.8409671121790058No Hit
AAGAGTCCTGTTACATTTTCAGCTTGTAAAGTTGCCACATTCCTACGTGG3900.8366764636474804No Hit
ACACGTGGTGTTTATTACCCTGACAAAGTTTTCAGATCCTCAGTTTTACA3840.8238045180529038No Hit
TCACGCATGATGTTTCATCTGCAATTAACAGGCCACAAATAGGCGTGGTA3660.785188681269174No Hit
ACTCTGAACTCACTTTCCATCCAACTTTTGTTGTTTTTGTGGTAATAAAC3650.7830433570034111No Hit
ACTGTAGTGACAAGTCTCTCGCAACTTCATCACTAATAAATGTACTACCA3570.7658807628773089No Hit
GTTGAGAGCAAAATTCATGAGGTCCTTTAGTAAGGTCAGTCTCAGTCCAA3460.7422821959539184No Hit
CACCAGCTGTCCAACCTGAAGAAGAATCACCAGGAGTCAAATAACTTCTA3450.7401368716881557No Hit
GCAATTGTTTTTCAGCTATTTTGCAGTACATTTTATTAGTAATTCTTGGC3390.7272649260935791No Hit
AATAACGGTCAAAGAGTTTTAACCTCTCTTCCGTGAAGTCATATTTTAAC3330.7143929804990025No Hit
CATCAGGAGATGCCACAACTGCTTATGCTAATAGTGTTTTTAACATTTGT3210.6886490893098492No Hit
CTCCTTTATCAGAACCAGCACCAAAATGTATAACTCTCATATTATAGGGT3110.6671958466522214No Hit
CACAACTTGCGTGTGGAGGTTAATGTTGTCTACTGTTGTAAACACCTTAA3100.6650505223864587No Hit
TGCACATCAGTAGTCTTACTCTCAGTTTTGCAACAACTCAGAGTAGAATC2950.6328706584000172No Hit
ACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA2780.59640014588205No Hit
CATCTTTAAGATGTTGACGTGCCTCTGATAAGACCTCCTCCACGGAGTCT2750.5899641730847618No Hit
TCATCAGATTCAACTTGCATGGCATTGTTAGTAGCCTTATTTAAGGCTCC2750.5899641730847618No Hit
GGAATTTGGTGCCACTTCTGCTGCTCTTCAACCTGAAGAAGAGCAAGAAG2740.5878188488189989No Hit
TGCCACAGTACGTCTACAAGCTGGTAATGCAACAGAAGTGCCTGCCAATT2690.5770922274901852No Hit
TGTTGACACTGACTTAACAAAGCCTTACATTAAGTGGGATTTGTTAAAAT2670.5728015789586596No Hit
CACGTTCACCTAAGTTGGCGTATACGCGTAATATATCTGGGTTTTCTACA2670.5728015789586596No Hit
GTTGAACCTTTCTACAAGCCGCATTAATCTTCAGTTCATCACCAATTATA2640.5663656061613713No Hit
TAGATTACCAGAAGCAGCGTGCATAGCAGGGTCAGCAGCATACACAAGTA2600.5577843090983202No Hit
TGTCGCTTCCAAGAAAAGGACGAAGATGACAATTTAATTGATTCTTACTT2590.5556389848325575No Hit
CCATGGCAGATTCCAACGGTACTATTACCGTTGAAGAGCTTAAAAAGCTC2530.5427670392379809No Hit
ACTACAGTCAGCTTATGTGTCAACCTATACTGTTACTAGATCAGGCATTA2410.5170231480488275No Hit
AGGACTGGTATGATTTTGTAGAAAACCCAGATATATTACGCGTATACGCC2400.5148778237830648No Hit
AGGTGTGAGTAAACTGTTACAAACAACAACAGCAAGTTGCAAACAAAGTG2310.4955699053911999No Hit
ACCACTAGTAGATACACAAACACCAGCTTCTGATCTTTCACAAGTGCCGT2300.49342458112543713No Hit
GCACAACTAATGGTGACTTTTTGCATTTCTTACCTAGAGTTTTTAGTGCA2270.4869886083281488No Hit
AACCTTTCCACATACCGCAGACGGTACAGACTGTGTTTTTAAGTGTAAAA2250.4826979597966232No Hit
GTTCCCTTCCATCATATGCAGCTTTTGCTACTGCTCAAGAAGCTTATGAG2230.47840731126509767No Hit
ACAGGTTCATCTAAGTGTGTGTGTTCTGTTATTGATTTATTACTTGATGA2200.4719713384678094No Hit
TGCTGTAGTTGTCTCAAGGGCTGTTGTTCTTGTGGATCCTGCTGCAAATT2170.4655353656705211No Hit
TGGTCAGAATAGTGCCATGGAGTGGCACGTTGAGAAGAATGTTAGTTTCT2070.4440821230128934No Hit
AATACAAGCACCAAGGTCACGGGGTGTCATGTTTTCAACTTTGTTATAGG2020.43335550168407955No Hit
GGCACATGGCTTTGAGTTGACATCTATGAAGTATTTTGTGAAAATAGGAC2010.4312101774183168No Hit
AGGCATGCCTTCTTACTGTACTGGTTACAGAGAAGGCTATTTGAACTCTA1990.4269195288867912No Hit
ACATTCTAACCATAGCTGAAATCGGGGCCATTTGTACAAGATTAATTATT1980.42477420462102844No Hit
AATTTGGAAGAAGCTGCTCGGTATATGAGATCTCTCAAAGTGCCAGCTAC1890.40546628622916353No Hit
CATGGCTGCATCACGGTCAAATTCAGATTTAGCCACATTCAAAGACTTCT1880.4033209619634008No Hit
ACAAACTGCCACCATCACAACCAGGCAAGTTAAGGTTAGATAGCACTCTA1810.38830369210306137No Hit
GTCCACACTCTCCTAGCACCATCATCATACACAGTTCTTGCTGTCATAAG1730.3711410979769592No Hit
GTTGTCCAACAATTACCTGAAACTTACTTTACTCAGAGTAGAAATTTACA1730.3711410979769592No Hit
CAGTACGTTTTTGCCGAGGCTTCTTAGAAGCCTCAGCAGCAGATTTCTTA1710.36685044944543366No Hit
GCTGTTATGTACATGGGCACACTTTCTTATGAACAATTTAAGAAAGGTGT1690.3625598009139081No Hit
TGTCCAACTTAGGGTCAATTTCTGTACAAACAACACCATCCAATTTATAA1670.3582691523823826No Hit
TGAGGGAGCCTTGAATACACCAAAAGATCACATTGGCACCCGCAATCCTG1640.3518331795850943No Hit
TGGACAGTAAACTACGTCATCAAGCCAAAGACCGTTAAGTGTAGTTGTAC1640.3518331795850943No Hit
CAATTTTGTAATGATCCATTTTTGGGTGTTTATTACCACAAAAACAACAA1640.3518331795850943No Hit
TGTTAAGCGTGTTGACTGGACTATTGAATATCCTATAATTGGTGATGAAC1620.34754253105356875No Hit
CAACCTTAGAAACTACAGATAAATCTTGGGATTTTATTATTTCAACAAAA1610.345397206787806No Hit
TAGGCTCTGTTGGTGGGAATGTTTTGTATGCGTCAATATGCTTATTCAGC1550.33252526119322934No Hit
TGGTATGACAACCATTAGTTTGGCTGCTGTTGTAAGAGGTATTATGTTCA1510.3239439641301783No Hit
TCAATAGCCGCCACTAGAGGAGCTACTGTAGTAATTGGAACAAGCAAATT1490.31965331559865273No Hit
ACTTGTGTTCCTTTTTGTTGCTGCATTCAGTTGAATCACCACAAATGTAC1480.31750799133289No Hit
AGAGTCCAACCAACAGAATCTATTGTTAGATTTCCTAATATTACAAACTT1390.298200072941025No Hit
TGTCGCAAAATATACTCAACTGTGTCAATATTTAAACACATTAACATTAG1390.298200072941025No Hit
TCTTTATAGCCACGGAACCTCCAAGAGCTAGCTTTTGTTGTATAAACCCA1380.29605474867526227No Hit
ACACTATGCGAGCAGAAGGGTAGTAGAGAGCTAGGCCAATAGCAAAATGA1380.29605474867526227No Hit
AACCAAAAACTTGTCCATTAGCACACAATGGAAAACTAATGGGTGGTTTA1360.2917641001437367No Hit
TGTTTATCACCCGCGAAGAAGCTATAAGACATGTACGTGCATGGATTGGC1360.2917641001437367No Hit
GGTACCAACAGCTTCTCTAGTAGCATGACACCCCTCGACATCGAAGCCAA1320.28318280308068566No Hit
TGATAGAGACCTTTATGACAAGTTGCAATTTACAAGTCTTGAAATTCCAC1290.27674683028339736No Hit
TTTGACTCCTTTGAGCACTGGCTCAGAGTCGTCTTCATCAAATTTGCAGC1270.2724561817518718No Hit
TTCTGAGTACTGTAGGCACGGCACTTGTGAAAGATCAGAAGCTGGTGTTT1250.26816553322034625No Hit
CATGGCTGCATCACGGTCAAATCAGATTTAGCCACATTCAAAGACTTCTT1240.26602020895458345No Hit
GGGCTATCATCTTATGTCCTTCCCTCAGTCAGCACCTCATGGTGTAGTCT1230.26387488468882075No Hit
GCCAACAACAACAAGGCCAAACTGTCACTAAGAAATCTGCTGCTGAGGCT1220.26172956042305795No Hit
ACCTAGACCACCACTTAACCGAAATTATGTCTTTACTGGTTATCGTGTAA1200.2574389118915324No Hit
TTTGTGCTTTTTAGCCTTTCTGCTATTCCTTGTTTTAATTATGCTTATTA1160.24885761482848134No Hit
AGCAGCATCTACAGCAAAAGCACAGAAAGATAATACAGTTGAATTGGCAG1140.2445669662969558No Hit
ACGAAAGCAAGAAAAAGAAGTACGCTATTAACTATTAACGTACCTGTCTC1090.23384034496814193No Hit
GCTTCAACAGCTTCACTAGTAGGTTGTTCTAATGGTTGTAAATCACCAGT1090.23384034496814193No Hit
CCTACCTCCCTTTGTTGTGTTGTAGTAAGCTAACGCATTGTCATCAGTGC1080.23169502070237916No Hit
ACCACCAACCTTAGAATCAAGATTGTTAGAATTCCAAGCTATAACGCAGC1070.22954969643661638No Hit
GTAATTGAGCAGGGTCGCCAATGTACACATAGTGCTTAGCACGTAATCTG1000.214532426576277No Hit
TGAGTTAACAGGACACATGTTAGACATGTATTCTGTTATGCTTACTAATG990.21238710231051422No Hit
AGTGCATTAACATTGGCCGTGACAGCTTGACAAATGTTAAAAACACTATT990.21238710231051422No Hit
ACACACCACTGGTTGTTACTCACAATTTTGACTTCACTTTTAGTTTTAGT990.21238710231051422No Hit
ATCACATAGACAACAGGTGCGCTCAGGTCCTATTTTCACAAAATACTTCA950.20380580524746317No Hit
TGCCAGAGATGTCACCTAAATCAACATCTGGTGATGTATGATTCTTAAAA920.19736983245017484No Hit
ATTCTACACTCCAGGGACCACCTGGTACTGGTAAGAGTCATTTTGCTATT920.19736983245017484No Hit
AGGTTCCTGGCAATTAATTGTAAAAGGTAAACAGGAAACTGTATAATTAC910.19522450818441206No Hit
TGCAAGAGATGGTTGTGTTCCCTTGAACATAATACCTCTTACAACAGCAG890.19093385965288653No Hit
TCCTTTGCAACCTGAATTAGACTCATTCAAGGAGGAGTTAGATAAATATT880.18878853538712376No Hit
ACCAGTACAGTAGGTTGCAATAGTGACATTAGTAGAGTTCAAATAGCCTT880.18878853538712376No Hit
TCAGGTGATGGCACAACAAGTCCTATTTCTGAACATGACTACCAGATTGG860.18449788685559823No Hit
ACTTTTGAAGAAGCTGCGCTGTGCACCTTTTTGTTAAATAAAGAAATGTA860.18449788685559823No Hit
ATGACAGCATCTGCCACAACACAGGCGAACTCATTTACTTCTGTACCGAG840.18020723832407268No Hit
TGTTCGCATTCAACCAGGACAGACTTTTTCAGTGTTAGCTTGTTACAATG820.17591658979254715No Hit
ACTCAACTTTACTTAGGAGGTATGAGCTATTATTGTAAATCACATAAACC810.17377126552678437No Hit
GGTGTTGTTGGAGAAGGTTCCGAAGGTCTTAATGACAACCTTCTTGAAAT790.16948061699525882No Hit
GGCCCCAAGGTTTACCCAATAATACTGCGTCTTGGTTCACCGCTCTCACT780.16733529272949604No Hit
TACCGAAGTTGTAGGAGACATTATACTTAAACCAGCAAATAATAGTTTAA780.16733529272949604No Hit
ACAGAATAAACACCAGGTAAGAATGAGTAAACTGGTGTTAAACAGAGTAC750.16089931993220774No Hit
GGGTGTGGACATTGCTGCTAATACTGTGATCTGGGACTACAAAAGAGATG740.158753995666445No Hit
TTCACTCTTCATTTCCAAAAAGCTTGAAACAAGTTTGTCATAGAGATTTT720.15446334713491944No Hit
AGAGTTTCTTAGAGACGGTTGGGAAATTGTTAAATTTATCTCAACCTGTG720.15446334713491944No Hit
AAACATGGAGGAGGTGTTGCAGGAGCCTTAAATAAGGCTACTAACAATGC700.1501726986033939No Hit
ATTGATGTTGACTTTCTCTTTTTGGAGTATTTCAAGAAGGTTGTCATTAA650.13944607727458005No Hit
TGGTGAAACTTCATGGCAGACGGGCGATTTTGTTAAAGCCACTTGCGAAT620.13301010447729172No Hit
CTTCTTTCTTTGAGAGAAGTGAGGACTTGTTCTTACCTTTCTTTTCCAAT620.13301010447729172No Hit
ACAAAGAAAACAGTTACACAACAACCATAAAACCAGTTACTTATAAATTG610.13086478021152897No Hit
TGCACAGGTGACAATTTGTCCACCGACAATTTCACAAGCACAGGTTGAGA590.12657413168000342No Hit
ATCAGAGGCTGCTCGTGTTGTACGATCAATTTTCTCCCGCACTCTTGAAA580.12442880741424067No Hit
CTGTTTTACAGGTTCGCGACGTGCTCGTACGTGGCTTTGGAGACTCCGTG560.12013815888271512No Hit
TGTAACTGGACACATTGAGCCCACAATTTAGATGATGATTCTACTCTGAG560.12013815888271512No Hit
GTGAAGTTCTTTTCTTGTGCAGGGACATAAGTCACATGCAAGAAGACTAC540.11584751035118958No Hit
TGAGAAGTGCTCTGCCTATACAGTTGAACTCGGTACAGAAGTAAATGAGT530.1137021860854268No Hit
AGCTTGTTTACCACACGTACAAGGTATCTGAACACCTTTCTTAAATTGTT530.1137021860854268No Hit
TCATCTAACCAATCTTCTTCTTGCTCTTCTTCAGGTTGAAGAGCAGCAGA530.1137021860854268No Hit
ACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACAAACT530.1137021860854268No Hit
AGTATTGCCCTATTTTCTTCATAACTGGTAATACACTTCAGTGTATAATG520.11155686181966405No Hit
TAAGGATCAGTGCCAAGCTCGTCGCCTAAGTCAAATGACTTTAGATCGGC520.11155686181966405No Hit

[OK]Adapter Content

Adapter graph