FastQCFastQC Report
Fri 26 Apr 2024
SAMPLE3_SE.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSAMPLE3_SE.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49202
Sequences flagged as poor quality0
Sequence length35-301
%GC38

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACTACCGAAGTTGTAGGAGACATTATACTTAAACCAGCAAATAATAGTTT10912.2173895370106904No Hit
CCAGCAACTGTTTGTGGACCTAAAAAGTCTACTAATTTGGTTAAAAACAA9381.90642656802569No Hit
ACTAGGTTCCATTGTTCAAGGAGCTTTTTAAGCTCTTCAACGGTAATAGT8361.6991179220356893No Hit
ACAGTATTCTTTGCTATAGTAGTCGGCATAGATGCTTTAATTCTAGAATT8311.6889557335067682No Hit
CGACTACTAGCGTGCCTTTGTAAGCACAAGCTGATGAGTACGAACTTATG7581.5405877809845128No Hit
TGAAATGGTGAATTGCCCTCGTATGTTCCAGAAGAGCAAGGTTCTTTTAA7521.528393154749807No Hit
AGCCTCATAAAACTCAGGTTCCCAATACCTTGAAGTGTTATCATTAGTAA7111.4450632088126498No Hit
CTTTTCTCCAAGCAGGGTTACGTGTAAGGAATTCTCTTACCACGCCTATT6561.3332791349945126No Hit
TGATTTGAGTGTTGTCAATGCCAGATTACGTGCTAAGCACTATGTGTACA6521.3251493841713753No Hit
GGTGTATACTGCTGCCGTGAACATGAGCATGAAATTGCTTGGTACACGGA6471.3149871956424535No Hit
CATCCAGATTCTGCCACTCTTGTTAGTGACATTGACATCACTTTCTTAAA6471.3149871956424535No Hit
GTACGCGTTCCATGTGGTCATTCAATCCAGAAACTAACATTCTTCTCAAC6351.2905979431730417No Hit
CAGCCCCTATTAAACAGCCTGCACGTGTTTGAAAAACATTAGAACCTGTA6261.2723060038209828No Hit
AGCAAAATGTTGGACTGAGACTGACCTTACTAAAGGACCTCATGAATTTT6221.2641762529978455No Hit
CACAAGTAGTGGCACCTTCTTTAGTCAAATTCTCAGTGCCACAAAATTCG6061.2316572497052967No Hit
AGTTTCCACACAGACAGGCATTAATTTGCGTGTTTCTTCTGCATGTGCAA5821.1828787447664728No Hit
AAGGTGTCTGCAATTCATAGCTCTTTTCAGAACGTTCCGTGTACCAAGCA5791.1767814316491199No Hit
AGTGAAATTGGGCCTCATAGCACATTGGTAAACACCAGATGGTGAACCAT5781.1747489939433355No Hit
CGGTAATAAAGGAGCTGGTGGCCATAGTTACGGCGCCGATCTAAAGTCAT5511.119873175887159No Hit
AGGAATTACTTGTGTATGCTGCTGACCCTGCTATGCACGCTGCTTCTGGT5431.1036136742408844No Hit
ACCTGAAAGTCAACGAGATGAAACATCTGTTGTCACTTACTGTACAAGCA5361.0893866103003942No Hit
ACACAGACCATTCCAGTAGCAGTGACAATATTGCTTTGCTTGTACAGTAA5331.0832892971830412No Hit
TCCCATCTGGTAAAGTTGAGGGTTGTATGGTACAAGTAACTTGTGGTACA4931.0019917889516685No Hit
TGACGATGACTTGGTTAGCATTAATACAGCCACCATCGTAACAATCAAAG4810.9776025364822569No Hit
GTTGATAAGTACTTTGATTGTTACGATGGTGGCTGTATTAATGCTAACCA4670.9491484086012765No Hit
TAACATGTTGTGCCAACCACCATAGAATTTGCTTGTTCCAATTACTACAG4550.9247591561318645No Hit
AGGTCTTCCTTGCCATGTTGAGTGAGAGCGGTGAACCAAGACGCAGTATT4490.9125645298971587No Hit
TGAGGCTGGTTCTAAATCACCCATTCAGTACATCGATATCGGTAATTATA4130.8393967724889232No Hit
AAGAGTCCTGTTACATTTTCAGCTTGTAAAGTTGCCACATTCCTACGTGG4040.8211048331368643No Hit
ACACGTGGTGTTTATTACCCTGACAAAGTTTTCAGATCCTCAGTTTTACA4030.8190723954310801No Hit
TCACGCATGATGTTTCATCTGCAATTAACAGGCCACAAATAGGCGTGGTA3800.7723263281980407No Hit
ACTCTGAACTCACTTTCCATCCAACTTTTGTTGTTTTTGTGGTAATAAAC3750.7621641396691191No Hit
ACTGTAGTGACAAGTCTCTCGCAACTTCATCACTAATAAATGTACTACCA3690.7499695134344132No Hit
CACCAGCTGTCCAACCTGAAGAAGAATCACCAGGAGTCAAATAACTTCTA3650.741839762611276No Hit
GTTGAGAGCAAAATTCATGAGGTCCTTTAGTAAGGTCAGTCTCAGTCCAA3620.735742449493923No Hit
GCAATTGTTTTTCAGCTATTTTGCAGTACATTTTATTAGTAATTCTTGGC3480.7072883216129425No Hit
AATAACGGTCAAAGAGTTTTAACCTCTCTTCCGTGAAGTCATATTTTAAC3480.7072883216129425No Hit
CATCAGGAGATGCCACAACTGCTTATGCTAATAGTGTTTTTAACATTTGT3390.6889963822608837No Hit
CACAACTTGCGTGTGGAGGTTAATGTTGTCTACTGTTGTAAACACCTTAA3340.6788341937319621No Hit
CTCCTTTATCAGAACCAGCACCAAAATGTATAACTCTCATATTATAGGGT3300.6707044429088248No Hit
TGCACATCAGTAGTCTTACTCTCAGTTTTGCAACAACTCAGAGTAGAATC3100.6300556887931386No Hit
CATCTTTAAGATGTTGACGTGCCTCTGATAAGACCTCCTCCACGGAGTCT2970.6036339986179423No Hit
ACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA2930.595504247794805No Hit
TGCCACAGTACGTCTACAAGCTGGTAATGCAACAGAAGTGCCTGCCAATT2900.5894069346774522No Hit
TCATCAGATTCAACTTGCATGGCATTGTTAGTAGCCTTATTTAAGGCTCC2850.5792447461485306No Hit
GGAATTTGGTGCCACTTCTGCTGCTCTTCAACCTGAAGAAGAGCAAGAAG2810.5711149953253933No Hit
GTTGAACCTTTCTACAAGCCGCATTAATCTTCAGTTCATCACCAATTATA2800.569082557619609No Hit
CCATGGCAGATTCCAACGGTACTATTACCGTTGAAGAGCTTAAAAAGCTC2790.5670501199138246No Hit
CACGTTCACCTAAGTTGGCGTATACGCGTAATATATCTGGGTTTTCTACA2780.5650176822080404No Hit
TGTTGACACTGACTTAACAAAGCCTTACATTAAGTGGGATTTGTTAAAAT2740.5568879313849031No Hit
TGTCGCTTCCAAGAAAAGGACGAAGATGACAATTTAATTGATTCTTACTT2730.5548554936791187No Hit
TAGATTACCAGAAGCAGCGTGCATAGCAGGGTCAGCAGCATACACAAGTA2700.5487581805617657No Hit
AGGACTGGTATGATTTTGTAGAAAACCCAGATATATTACGCGTATACGCC2550.5182716149750011No Hit
ACTACAGTCAGCTTATGTGTCAACCTATACTGTTACTAGATCAGGCATTA2530.5142067395634324No Hit
AGGTGTGAGTAAACTGTTACAAACAACAACAGCAAGTTGCAAACAAAGTG2500.5081094264460794No Hit
AACCTTTCCACATACCGCAGACGGTACAGACTGTGTTTTTAAGTGTAAAA2410.4898174870940205No Hit
ACCACTAGTAGATACACAAACACCAGCTTCTGATCTTTCACAAGTGCCGT2370.48168773627088335No Hit
GCACAACTAATGGTGACTTTTTGCATTTCTTACCTAGAGTTTTTAGTGCA2350.47762286085931466No Hit
GTTCCCTTCCATCATATGCAGCTTTTGCTACTGCTCAAGAAGCTTATGAG2290.46542823462460875No Hit
ACAGGTTCATCTAAGTGTGTGTGTTCTGTTATTGATTTATTACTTGATGA2270.4613633592130401No Hit
TGCTGTAGTTGTCTCAAGGGCTGTTGTTCTTGTGGATCCTGCTGCAAATT2260.4593309215072558No Hit
TGGTCAGAATAGTGCCATGGAGTGGCACGTTGAGAAGAATGTTAGTTTCT2100.4268119182147067No Hit
GGCACATGGCTTTGAGTTGACATCTATGAAGTATTTTGTGAAAATAGGAC2100.4268119182147067No Hit
AATACAAGCACCAAGGTCACGGGGTGTCATGTTTTCAACTTTGTTATAGG2080.4227470428031381No Hit
AGGCATGCCTTCTTACTGTACTGGTTACAGAGAAGGCTATTTGAACTCTA2060.41868216739156944No Hit
ACATTCTAACCATAGCTGAAATCGGGGCCATTTGTACAAGATTAATTATT2050.4166497296857852No Hit
AATTTGGAAGAAGCTGCTCGGTATATGAGATCTCTCAAAGTGCCAGCTAC2000.4064875411568636No Hit
CATGGCTGCATCACGGTCAAATTCAGATTTAGCCACATTCAAAGACTTCT1970.4003902280395106No Hit
ACAAACTGCCACCATCACAACCAGGCAAGTTAAGGTTAGATAGCACTCTA1930.3922604772163733No Hit
GTCCACACTCTCCTAGCACCATCATCATACACAGTTCTTGCTGTCATAAG1890.38413072639323603No Hit
CAGTACGTTTTTGCCGAGGCTTCTTAGAAGCCTCAGCAGCAGATTTCTTA1810.3678712247469615No Hit
TGGACAGTAAACTACGTCATCAAGCCAAAGACCGTTAAGTGTAGTTGTAC1780.3617739116296086No Hit
GCTGTTATGTACATGGGCACACTTTCTTATGAACAATTTAAGAAAGGTGT1760.3577090362180399No Hit
GTTGTCCAACAATTACCTGAAACTTACTTTACTCAGAGTAGAAATTTACA1750.3556765985122556No Hit
TGTCCAACTTAGGGTCAATTTCTGTACAAACAACACCATCCAATTTATAA1720.3495792853949027No Hit
TGAGGGAGCCTTGAATACACCAAAAGATCACATTGGCACCCGCAATCCTG1720.3495792853949027No Hit
CAACCTTAGAAACTACAGATAAATCTTGGGATTTTATTATTTCAACAAAA1700.34551440998333405No Hit
CAATTTTGTAATGATCCATTTTTGGGTGTTTATTACCACAAAAACAACAA1700.34551440998333405No Hit
TGTTAAGCGTGTTGACTGGACTATTGAATATCCTATAATTGGTGATGAAC1690.3434819722775497No Hit
TCAATAGCCGCCACTAGAGGAGCTACTGTAGTAATTGGAACAAGCAAATT1640.33331978374862814No Hit
TAGGCTCTGTTGGTGGGAATGTTTTGTATGCGTCAATATGCTTATTCAGC1630.3312873460428438No Hit
ACTTGTGTTCCTTTTTGTTGCTGCATTCAGTTGAATCACCACAAATGTAC1560.3170602821023536No Hit
TGGTATGACAACCATTAGTTTGGCTGCTGTTGTAAGAGGTATTATGTTCA1530.31096296898500064No Hit
AGAGTCCAACCAACAGAATCTATTGTTAGATTTCCTAATATTACAAACTT1500.30486565586764763No Hit
AACCAAAAACTTGTCCATTAGCACACAATGGAAAACTAATGGGTGGTTTA1490.3028332181618633No Hit
TGTTTATCACCCGCGAAGAAGCTATAAGACATGTACGTGCATGGATTGGC1470.29876834275029474No Hit
TCTTTATAGCCACGGAACCTCCAAGAGCTAGCTTTTGTTGTATAAACCCA1460.2967359050445104No Hit
GGTACCAACAGCTTCTCTAGTAGCATGACACCCCTCGACATCGAAGCCAA1440.2926710296329417No Hit
TGTCGCAAAATATACTCAACTGTGTCAATATTTAAACACATTAACATTAG1430.2906385919271574No Hit
TGATAGAGACCTTTATGACAAGTTGCAATTTACAAGTCTTGAAATTCCAC1400.2845412788098045No Hit
ACACTATGCGAGCAGAAGGGTAGTAGAGAGCTAGGCCAATAGCAAAATGA1400.2845412788098045No Hit
TTCTGAGTACTGTAGGCACGGCACTTGTGAAAGATCAGAAGCTGGTGTTT1360.2764115279866672No Hit
GCCAACAACAACAAGGCCAAACTGTCACTAAGAAATCTGCTGCTGAGGCT1310.26624933945774565No Hit
GGGCTATCATCTTATGTCCTTCCCTCAGTCAGCACCTCATGGTGTAGTCT1310.26624933945774565No Hit
AGCAGCATCTACAGCAAAAGCACAGAAAGATAATACAGTTGAATTGGCAG1300.26421690175196133No Hit
TTTGACTCCTTTGAGCACTGGCTCAGAGTCGTCTTCATCAAATTTGCAGC1300.26421690175196133No Hit
ACCTAGACCACCACTTAACCGAAATTATGTCTTTACTGGTTATCGTGTAA1290.262184464046177No Hit
CATGGCTGCATCACGGTCAAATCAGATTTAGCCACATTCAAAGACTTCTT1280.2601520263403927No Hit
TTTGTGCTTTTTAGCCTTTCTGCTATTCCTTGTTTTAATTATGCTTATTA1220.24795740010568676No Hit
ACCACCAACCTTAGAATCAAGATTGTTAGAATTCCAAGCTATAACGCAGC1170.23779521157676514No Hit
GCTTCAACAGCTTCACTAGTAGGTTGTTCTAATGGTTGTAAATCACCAGT1160.23576277387098088No Hit
ACGAAAGCAAGAAAAAGAAGTACGCTATTAACTATTAACGTACCTGTCTC1130.2296654607536279No Hit
CCTACCTCCCTTTGTTGTGTTGTAGTAAGCTAACGCATTGTCATCAGTGC1130.2296654607536279No Hit
ACACACCACTGGTTGTTACTCACAATTTTGACTTCACTTTTAGTTTTAGT1060.2154383968131377No Hit
TGAGTTAACAGGACACATGTTAGACATGTATTCTGTTATGCTTACTAATG1030.20934108369578472No Hit
GTAATTGAGCAGGGTCGCCAATGTACACATAGTGCTTAGCACGTAATCTG1030.20934108369578472No Hit
AGTGCATTAACATTGGCCGTGACAGCTTGACAAATGTTAAAAACACTATT1020.2073086459900004No Hit
ATCACATAGACAACAGGTGCGCTCAGGTCCTATTTTCACAAAATACTTCA990.20121133287264747No Hit
AGGTTCCTGGCAATTAATTGTAAAAGGTAAACAGGAAACTGTATAATTAC970.1971464574610788No Hit
ATTCTACACTCCAGGGACCACCTGGTACTGGTAAGAGTCATTTTGCTATT940.19104914434372589No Hit
TGCCAGAGATGTCACCTAAATCAACATCTGGTGATGTATGATTCTTAAAA930.18901670663794154No Hit
ACCAGTACAGTAGGTTGCAATAGTGACATTAGTAGAGTTCAAATAGCCTT930.18901670663794154No Hit
TCCTTTGCAACCTGAATTAGACTCATTCAAGGAGGAGTTAGATAAATATT920.18698426893215722No Hit
ACTTTTGAAGAAGCTGCGCTGTGCACCTTTTTGTTAAATAAAGAAATGTA920.18698426893215722No Hit
TGTTCGCATTCAACCAGGACAGACTTTTTCAGTGTTAGCTTGTTACAATG910.1849518312263729No Hit
TCAGGTGATGGCACAACAAGTCCTATTTCTGAACATGACTACCAGATTGG910.1849518312263729No Hit
ATGACAGCATCTGCCACAACACAGGCGAACTCATTTACTTCTGTACCGAG910.1849518312263729No Hit
TGCAAGAGATGGTTGTGTTCCCTTGAACATAATACCTCTTACAACAGCAG890.1808869558148043No Hit
ACTCAACTTTACTTAGGAGGTATGAGCTATTATTGTAAATCACATAAACC880.17885451810901995No Hit
GGCCCCAAGGTTTACCCAATAATACTGCGTCTTGGTTCACCGCTCTCACT850.17275720499166702No Hit
GGTGTTGTTGGAGAAGGTTCCGAAGGTCTTAATGACAACCTTCTTGAAAT820.16665989187431407No Hit
GGGTGTGGACATTGCTGCTAATACTGTGATCTGGGACTACAAAAGAGATG790.1605625787569611No Hit
TACCGAAGTTGTAGGAGACATTATACTTAAACCAGCAAATAATAGTTTAA780.1585301410511768No Hit
AGAGTTTCTTAGAGACGGTTGGGAAATTGTTAAATTTATCTCAACCTGTG770.15649770334539248No Hit
ACAGAATAAACACCAGGTAAGAATGAGTAAACTGGTGTTAAACAGAGTAC760.15446526563960813No Hit
AAACATGGAGGAGGTGTTGCAGGAGCCTTAAATAAGGCTACTAACAATGC750.15243282793382382No Hit
TTCACTCTTCATTTCCAAAAAGCTTGAAACAAGTTTGTCATAGAGATTTT740.15040039022803953No Hit
ATTGATGTTGACTTTCTCTTTTTGGAGTATTTCAAGAAGGTTGTCATTAA720.14633551481647086No Hit
TGGTGAAACTTCATGGCAGACGGGCGATTTTGTTAAAGCCACTTGCGAAT710.14430307711068655No Hit
CTTCTTTCTTTGAGAGAAGTGAGGACTTGTTCTTACCTTTCTTTTCCAAT670.13617332628754927No Hit
ATCAGAGGCTGCTCGTGTTGTACGATCAATTTTCTCCCGCACTCTTGAAA620.1260111377586277No Hit
CTGTTTTACAGGTTCGCGACGTGCTCGTACGTGGCTTTGGAGACTCCGTG620.1260111377586277No Hit
TGCACAGGTGACAATTTGTCCACCGACAATTTCACAAGCACAGGTTGAGA620.1260111377586277No Hit
ACAAAGAAAACAGTTACACAACAACCATAAAACCAGTTACTTATAAATTG610.12397870005284338No Hit
TGAGAAGTGCTCTGCCTATACAGTTGAACTCGGTACAGAAGTAAATGAGT590.11991382464127474No Hit
TGTAACTGGACACATTGAGCCCACAATTTAGATGATGATTCTACTCTGAG590.11991382464127474No Hit
GTGAAGTTCTTTTCTTGTGCAGGGACATAAGTCACATGCAAGAAGACTAC590.11991382464127474No Hit
AGTATTGCCCTATTTTCTTCATAACTGGTAATACACTTCAGTGTATAATG580.11788138693549044No Hit
ACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACAAACT580.11788138693549044No Hit
TAAGGATCAGTGCCAAGCTCGTCGCCTAAGTCAAATGACTTTAGATCGGC570.11584894922970612No Hit
AGCTTGTTTACCACACGTACAAGGTATCTGAACACCTTTCTTAAATTGTT560.11381651152392179No Hit
TCATCTAACCAATCTTCTTCTTGCTCTTCTTCAGGTTGAAGAGCAGCAGA550.11178407381813747No Hit

[OK]Adapter Content

Adapter graph